RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7640

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

9768794

End:

9774244

Strand:

+

Ref_name:

OSA-LNCN7640

Sequence
(OSA-LNCN7640.1):

UGGGCAGAACAUCCAUUGUUUAUUUUCUAUGAUAUAUCUCAACUCACAAAUAUCCAUAAGAGGAAUUAGAGAACUUGAGUACUAAACAUGUAUAGAACUUAGCUAAAACAGGAGAGCUUUCUUAUGUAGUUAUCUCAUGUCACUUGGCCUCGAUAUGAGGUAGAUUGUUUCCACACAACACAUCCGUAUCAAGGUUUCUUAAAUCUCAAUAUAGAUCCUCAAGGAGGACAAGAGAGCCAAACCAAAUCUACUAAAAAAUGGUUUUCUCUAGAGGCCAAAAUGUAUUUUCGCUGGCGGACAGUGAUGCCGCUAGCAGUCUAAGGCUAGUGAAAUAAAUGCAUUUUAACUAGUGGCCGACCGGCCGCCAGUGCAAAUCGAGUUUGACAAACAGCAUGCUAAGACAGCCACUAGCAAAAAUAGUAUGUUUGUUGGCGGCAUCUAGGAGAACCGCCAGCGAAAACAUUUUUGGAGCAAAAAGAAAAUUGAAAAUCAGGAUCCAGAUCUGUGCUCGAAACCACGAUGAUGACGCCAGGCUCCAACACCGGUCUUGGCCUGCUUGUUGAGCUAUGCCAAAGGUCCCGGAGCAAGGCAUGCACGACCGUCGCCAUGUCCAUCCUUGUUAGCCUCGCCGUCACCGUAUCCAUCUUCCAUGAGCGCGGAUCGGUCCAAGCCAGAGGGAGGGAGGGUAGAGGUCAGCUCCCCAUCCAUGGGAAUCGAUGCCCUCGGAGUCUCCGCCACCAGAUCCACCUUCAAACAGGGUGGCUGCCAAUGGAUCCGCUGCCAAACGGGGUUGCCGCCUCCGGAUCCGCCUCUGAACGGGGUCGCCGCUACCGGAUCUGCCUCCGAACAGAGUUGCGGCCGCCGGAUCCAUCGCCGCUGAACGGAGUCGCCCAAUCUCCGUUGCUGCCUGUGGACGCCGCCACCGUGGGGAAGGGUGAUGGAGGGCGUGCCUGUGGGGAAUGGGGUCACCCAAGCUUUUCUCGUGGACGCUGCCGCCCAUGUGAAAGGAGGAGACGGGCCCACCCGUGGGGAAGGAGGAGGAGCCCAAGCUCCGAGCGGCGCCAAUGGGGAAGGAGGCAGAAGAAGGGAGAGGGAGGAAGAAAUGGUGAGGGAGGAAAGG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

56

LEP:

11.38%

ME_num:

411

MEP:

83.54%

HE_num:

24

HEP:

4.88%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.68

Avg Expression:

6.00

Tip: OSA-LNCN7640 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA1.564093298277210.00266096691039885
2WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h4.385046633294530.040451167518765
39311 // leaf // control--/--9311 // leaf // salt-2.014884343147530.0151021877537945
49L136 // leaf // control--/--9L136 // leaf // salt-1.629055674648060.00129682646980333