Chr:
Chr9
Start:
8420210
End:
8424441
Strand:
+
Ref_name:
OSA-LNCN7590
Sequence
(OSA-LNCN7590.1):
UCCUCCCCCAUUUAUAUGAAUCUUAAAGUAUAUGAAUCUUAAAGUAAAACUAACGGUUUAAAAUUAUGAAAAAGUUACAACACGUUACGUUGUAGUUUAAUGCUAAUUAAAAUGAAAAAUACUACAUUUAUAUCUAUCCCAAAUUAAAAAAUGCGCAAGGCUUCCAGUAAGAAAAUCGUCCGUCUCCUGUUAUCCGAUAAAAAUCUACGCGUGUGACUUCCUUGUGUAUUCGUGUAAUCCGUCUCGGUCGCCCCGCGGUGGAAAAACACACGGCGUGGUGCUGGGCCUCCCGCCUCCGAUAAAUCGAUAAAUCCUGAGCCUCCAGCCCAGACCAGGAGGUUUUCAAUACAACAAAUGAACCAAAUCGGAUACACCACACCACAAGGCAAGAACCAAAAUCAAAGCUAGUGAAUCAGAAAAGCACAACAGAGGGAAAGAUCACCGUAAAACAACCACAAAUUUUCAAGGACAUCCUCUCGCUGCCAAGGCAUUCGAGAAGAAAAGACUGCAUUGACCUAUCAUUUUCUUCUAGCUAUCUCGUGGCUGUGGGGGAAGAAGAGAAACCGAUCCAGCAGCGACUCUCCCCCAAUCCCAAACCGAUCCAAGAAACUCCCUCCAAAUCAACCAUCCCCAUCCUUCCCUUACCCAAGAAAGACACAUGUGUUCUUCAGUAAUCCUCAAUCAAACCACUCCAAUCAAAGAAAUCCUCGCUUCACCUCACCCGCUCCUCUACCUAGAUGGAGAUGACAAAAAGAAAAUCCACAAGGUGCUCCUCUACCGCCUUGUUGCCGGUGGCAGCAGCCUUUAUCUCCAUGGCCGACGGUGCGGUGGAGUCUGCGCGAUGACCGCAUCCCGCCUUGGCGCGGCGGCCCUCGAGGCGAGCGCGACCGUGACCGCGAGCGUGGCCAAGGCGGUGGACUCGGCAGUGAAGGCGUGACAGGGGCGAUGGGUGAGGAGGGCAGCGAGAUGAGCUCAGCGGAGACAAGCAGCGCGCGAGAAAAAGAGGGAUGGCGGAGAAAGCGAGGAAAAGAGAAUAAGACCGAUACCAUGGAGCCUGGGCGGAUAGGUCCGACUAGGAAGAGGCGAGAAGUGUGGCUCCGUCCGUUGUCGCCAUUACAUGGAUGGCUGGGACAUGUCACGAGACUCACGACGCGUGGAGGACAAAUAGCUGGCUGAUGAGCUACAGCAUGCUAGGGCACUCACCAAGACAGACGGUGUCAGACAUGGCGCAGUGAAAGUGGCUUCCACUGCUCGACUGCUUCACGCCCACUAGUACACGUACACGGAAAGCGUUCGGUCACAUGGAAUCUGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
27.64%
ME_num:
MEP:
69.11%
HE_num:
HEP:
3.05%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_elongation_zone
Tau :
0.66
Avg Expression:
3.15
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.21466448442488 | 0.0456595652473344 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -4.78015504262032 | 0.046323377301709 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.34899226857017 | 0.0379739992330888 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h | -1.29227691735729 | 0.0359767290450305 |
| 5 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.33520621337577 | 0.0352321143643368 |
| 6 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.47578325814565 | 0.00649842453072281 |
| 7 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -2.24512917795633 | 2.42671077615744e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.08779359198323 | 0.0489226460296757 |