Chr:
Chr9
Start:
8348214
End:
8348853
Strand:
+
Ref_name:
OSA-LNCN7588
Sequence
(OSA-LNCN7588.1):
CUAUGUAUUUGAUAUGAUAUUCAAAAUUUGCCUGCAGGAUUUGAUCAUAUUUGAAAUAUGAAUCGUAUAAACAGGUGGAUAUGGUAGUUUUACACAAAUAUGAAUUAGCAAGUUAUAUUUUCGAAUUUAUAUAACACAUACUAUGUGUUAUAUAAAUUCGAAAAUAUAACUUGCUAAUUCAUAUUUGUGUAAAACUACCCUAUCCACCUAUUUAUACGAUUCAUAUUUCAAAUAUGAUCAAAUCCUGUAGGCAAAAUUUUGAAUAUCAUAUCAAAUACAUAGUAUGUAUUUUUUCUAAUUUAAAUCUAGAAUAUAUAUUUUUUGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
83.33%
ME_num:
MEP:
7.93%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.97
Avg Expression:
11.20
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.93348158188042 | 3.36947683417643e-10 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 7.05596371628946 | 5.76619130397271e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 8.5682060203627 | 3.94220827683378e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.7114837756737 | 4.75494857792321e-12 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 8.26603008605508 | 4.43634517556991e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 7.42453450831452 | 8.97129490311345e-09 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 7.10766574441593 | 2.72013052494863e-08 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.49465787797677 | 0.0257247021901993 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.91269100255352 | 8.4195612420427e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 8.22188112124299 | 3.57565590031343e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 7.81370824757769 | 7.66697067752691e-10 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 6.8494873534912 | 7.00779232229731e-08 |