Chr:
Chr9
Start:
8132271
End:
8132974
Strand:
.
Ref_name:
OSA-LNCN7583
Sequence
(OSA-LNCN7583.1):
GAUGAUGUCAUCUGGAGAGUUUAAAAUAGUUUACCCUACACACACAUAUAGAGAGAGCAGAAAUACAUAAAGAAAGCAUUACAAGUCGCAACACAAUUAAGAAAUCGAUUCAUCACAUAUAUAUUAUCAUAUCGAAGGUUGCCUACCUGCUUAUUAUUUCAAUUGAUCAGAAAUGGAGAACAACAACCAUCAUCUCAAAAACAAAAAGCAAAAUAGAAAAAACAAAGGAAAAUAAUGGAGGAAGCGACGAAGCAACGAUCAUAUAUCAUUUUAUGUAAUCAUGUGGCCAGCAAUAUACUAAAUUAAGUUGCCAAGCCUCCGGCGGCCGGAUCUUUCGCCGGCGGCGGCGGCGGCGGCAUCGGCGUCGCUGGAGGCUGUUGAUCUACUACCUUAGAGGCCGGACCACUUUUUUCCGGCGACGGCAACAGCGGCGCCUUCUUGCAGCACCCGACGCCACAGUUGCAGGUCAUCAGCUUCGAGCAUGACAAGCUGCAAUACGUGUUUCCCAUCGUUGCAGCUGCACUGCACCUUUGCACACCUCUCUCUCUCUCUCUCUCUCUCUCUCUCUACAGAUAUCUCUUGUGUGUAUGUGUGCACUAUAAAUAAAUCUGAAGAAUAUGUUCUUUCUCCAAAAAAGCUAGGGCCUUCCAUAAUAAAAGAAGAACAAAAAGGGAUUAUUCCUCAUCAGUGUAGAUCGAUGAAGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
51.42%
ME_num:
MEP:
39.43%
HE_num:
HEP:
8.94%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.89
Avg Expression:
4.16
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -2.9320524444339 | 0.00696140090050653 |
| 2 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.53289915889984 | 0.0377631645913663 |
| 3 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.41452904975614 | 1.64690713615637e-10 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | -2.27709738050388 | 0.0126586117078281 |
| 5 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -2.99046877838858 | 7.15466531497655e-07 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -2.11479819305273 | 0.00146357455748002 |
| 7 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.68934940696627 | 0.0137767501804682 |