RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7577

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

7898095

End:

7902441

Strand:

+

Ref_name:

OSA-LNCN7577

Sequence
(OSA-LNCN7577.1):

CUUGGUUAUAAUGCAUAUCUGCAUGUGAAUGAGUUCACGGAGUGUCCUAUAAAAGGCUCCUACCUCUUCACAUGAUAACCAGAUCUACAUAAACUCAAGCAGCAAACUCUUACAUUGCUUCGCCUUCUACUUCUCCAAUCAAAAUAAGUCAGUAAGUCACUAUCAGCCUUGUGCACAUGAAAGCAGAGAGGAAGAACAUAAGAAGUGGAAGAUUCAUUAGAACUCGGAAAGAGUGUCAAACUCGGCUGUACAUCAUCCGAUGGUGUCUGGUCAGGCUCCUCUGUUGGCAUGAUUGACUUCAAAUCUUCAACGCAUUUGUCAUCAACAUUUCUUCAACCCACGACCAGUGCUUCUUUAUGAUAAGAUCUAAGGACCACCAACAAAGAGUCAAACAUUACAAUUUACUUGAAUGCUGCAGUCAAGGAGACAAAGGGUGUAACAAACCAGGUAUUUUGGCUUUGCUUAGUGGUUAGGUAGCAAUCUAUUGAGCAUCCAAUGAUGCCUGAUAUUCACUUUAAAAAAUGUCUCAUCUAGGAACAUGCAGUCAACAAUUACUUCAAAAGUCAAACUUGAGAACUGUUUUCUGGUAUGAAUGAAACUGCUGAAGAAUACUGAGUGUAGCUUGAAAGAUAACACCGAGUACCAUAGGACCUGCAAGACUGCAACACUCUCCUAAAAUAAGUUCUUUUUUUUUGCUGGGGAUCCUCAAAAAUUGUUUGACAUCAGCGCUCUCCACAAAUACUGAAGAACUGAUAUGUUAAAACUAGGACAGAAGAAACAUUAUGUAUAUCAUAUCAAGAGCCAACAACCACAUUUGAUUCCACUGAACAAACAAAAAAAUACGAUGAUUAAUUGCAAAUCACGGCAUGCGCUUGUCAGAUCUUUCAAGGUGUAUAACAUCUAGUGAUUUGCAGUCUUCAUCAUAAUCCAUAAGCUAUGCAAUUUAAAAUGUGUAACUCACAAAAUAUAGGAGACAUUCCUAAUUGAGUCCUAGGGAGAAGGAAUUUGGUAGGAUGAGAUCAAACAGAGGGGAGGAAGAACCAGUAUAACGAGAUGAAGAGGAAUUUGGUGCUGAAAUGUGUUUUCUCAUUGAACAAAUGAAGCCUUAUACUUCCAACAGUUAGCCAGUCCUACAUAUUACAGAACUCAAUACUACUCACACUUUGUUAGGAACCUUGUAGUCCUCUAGUGUAUUACAAUAUGGUCCCAAAAAAAAGUGAAAUGAUGUAUAUUGGCCAGGAAAUCAACAAUGUGCUAUAUGUACCAUGUAAGUAAAGGCACAAAGAAGGGACAGAAAUUUGCCUUAUUAUAAAUCUAAUCCUUAUAAUUACACUUAACAAAUAGAGAAGGAACAGACAAUGUCAGAUUAUUCUAUUAGGUUACUUCAAGUACGGAACCAAAUAUGUUGCAAUCAUUUUAUCAUUGGUCAAUGCAGCAUCUACCCAAGUUAGGUUUAUUACAAGAUAUGAGUCCUUGAAGAGAAAGUGACUGUUCAUUGAACCAUGGCUGAUGUAUUGAAAAAAAUUGUAUGUGGAUAAGAAGGAUAAAAUAGCACAAGAUAUAUGGCAAUAAUAAGCUGAUUUAGAGUCUUUUUGGUUCAUUUUGGUAGGGAACCAAACAUUCUUCAUCUCCAAUUUACCAAACUUUGGUAAUGCCAAAACCUGCCCAUGUUUUGGCAUUACAAAAUGUAGAAUAAGUAGAAUAGAUGCCUCUCACAAAGUGUGGAGGUGAAAUCUCAUAUAUAUAUAGCUGAGUUACAGUUAGUGCUACAAAAGACCAAGAGUUACACUUAAUGCUAGUGCUGAGUUUACACUAAAUUCUAUAAGUUACAUAAGCCCAAAAGUCUAGAAGAGAAACAGUCUAAGGAUUAAUAAAUAAUCCUAAUACAAAAUUAUGGUAAGGUAGAAAAUCAAACCAGCCUUUAAGUACAUAAGAUCUAACAAGGUCAGACUAUAUUAGAUGGAUAAGUAUCUAUAUUUCAUUAUGCUUAUCACAUACUCCCUCCAUCCCAAAAUAAGUGUAGUUUUGCACUGUUCAUGUCCAACGUUUGACCGUUUGUCUUAUUUGAAAAAUUUUUAUGACUAAUACUUUUAUUGUUAUUAGAUGAUAAAACAUGAAUAGUACUUUAUGCUUGACUACUUUUUUAAAUUUUUUUCAUAAAUUUUUCAAAUAAGACAAACGGUCAAACGUUGGACACGGAUACCCACGGCUGCACUUAUUUUGGGACGGAGGUAGUACAUCACACCACCAAUUAAAAUCACUGUGACUAAUA

Sequence
(OSA-LNCN7577.2):

AUAAACUCAAGCAGCAAACUCUUACAUUGCUUCGCCUUCUACUUCUCCAAUCAAAAUAAGUCAGUAAGUCACUAUCAGCCUUGUGCACAUGAAAGCAGAGAGGAAGAACAUAAGAAGUGGAAGAUUCAUUAGAACUCGGAAAGAGUGUCAAACUCGGCUGUACAUCAUCCGAUGGUGUCUGGGAAGUCAUUAUGUCAAGGAGUCAAUCGAGGUGUUACAACUUAUUGAAGCAAGAGCUGAUUGAGAGAUCUAGCUGCAAUUACAUAACUGGGAUUUUUGUUGGAAUUAUGAAAGCAACUUCUUCUCCAGUUUGUUAGUUGAGAAAAUUUUGUAAUUCUUAUCCUUUUCUUGCCUGGUUAACAUGACAUUUUGCUUUUGUAUUAGAUCACAUUGGAUGUACAUUCUUUCUGCUAAUUAAAACUUAGUUUCUUAUUAAAUCACAUCAGUUGUAAAUUGUUUACAAGGGAAUAAUGUUUCUUGUAGCAAAUAAUGAAAAGGCGGGCUAAAGGUUCUGAAUUAUCCGGCUGUUGUAUAUAAUUAAAGCAAUUGCUUUCCACUUGAUCAGUUAAUGAGGAAACAUCAAACCUGCUUCAGAAUGCGUAUUAUAAGAACUAUUAUUCACUUUCAUCUCCUUUCAUCAUCAUGCAUCAGCUCCACAGAUCAAUGAGAAUAUCAGAAAGUGACAAUAACAGAUCUUCUAUUGCCAUUUUCAGAGAAAUGCUAUUGUAACUGAAAUUUUUUUAAAAAAUCACUUUUACUAACCUUUGUUUACACAAACAUACAACAACAGUAACACAUAAUAACUUCUGCAGUAUAAGCUACAUGAAGUAUAUCAUAUAAGGUAAGCAAGUGUGCAUAUUAUAUUACCUGACAUAAUGAAGCCUUCAAUAUCUUCAUAGAUGGACAGGGUUAUGCAACAUAAAAGCAUAAAGCAACAAGUUUCUUAUGGCACCUCUAGCCUUGUCCAAUUAAGAGAGAGUUGCUACCUAUCCAUCAAGGAAUUCAGCAUCAUAACAGAUCUCAAAUAAACAUUAUAAUCUAAAAGGACUCAUACAUGCCCAUAACGGGAAGAAAAUCUUUUACUGAAACAGAGCUUUAAUAGAAUCCACCUUCUAUUGUUAAGGAACUGAACCGGUUUCAUUUUACUUGUACUCAGAUAUAGAUUCAUGUUUUCAAAUAUAUGUCAAAUUACUAAAUUGACAUUCACCAGAUGUGUUGACUUUUGCACCCUCUGUACCGAACAGAGCUUGCAUAACAGAAUGCACAUUCUAUUUAAGAAUCGAACUGCUUGCAUUUUACUUAUACUCAGAUAUACAUAUUACUUCUAUUCAAAUAUAUGCCAAACUACUAUAUUGGCAUGAAACAGUAAUACUUAAUGAAUAGACUUGUGCACUGCUUUUACCAAACAGAGCUUGAAUAACAGAAUGCACCUUCUAUUAAGGAACUGAACUACUUGCAUUUUACUUAUACUCAGAUAUAGAUCUUGUUUGUAUUCAAAUACAUGUAAAUUACUUCAUUGGCAUGGAAUAGUAAUAUUUAAUGAAUUGACUUUUGCACUGUUUUGCCAGACAGUCAGAAUGCACCUUCUAUUGUUGAGGAACUGAACCACUUGCAUUUUACUUCUAAUCAGACAUAGAUCUUACUUGUAGUCACAUAUAUGUAAAAUUAAUUCAUUGACAUGAAACGCUAAUAUUUAAUUAAUUGACUUUUCCAUUCAACAAUUGGCCCUUUUGACUUCAUGUUCUUUGCAGACCAGUGCUUCAUUUUACUUAUACUUAAGUAUACAUAUUACUUCUAUUCAAAUAUAUGCCAAACUACUAUAUUGGCAUGAAACAGUAAUACUUAAUGAGUAGACUUGUGCACUGCUUUUACCAAACAGAGCUUGAAUAACGGAAUGCACCUUCUAUUAAGGAACUGAACUACUUGCAUUUUACUUAUACUUAGAUAUAGAUCUUGUUUGUAUUCAAAUACAUGUCAAUUACUUCAUUGGCAUGAAACAGUAAUAUUUAAUGAAUUGACUUUUGCACCGUUUUGCCAGACAGAGUCAGAAUGCACCUUCUAUCAUUGAGGAACUAAACCACUUGCAUUUUACUUCUACUCAGACAUAGAUCUUACUUGUAUUCACAUAUAUGUAAAAUUACUUCAUUGACAUGAAACGCUAACGUUUAAUUGAUUGACUUUUCCAUUCAACAAUUGGCCCUUUUGACUUCAUGUUCUUUGCAG

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

245

LEP:

49.8%

ME_num:

229

MEP:

46.54%

HE_num:

17

HEP:

3.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.86

Avg Expression:

5.99

Tip: OSA-LNCN7577 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-2.480076951789354.49267201021196e-43
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-2.250241362318022.45574760948313e-40
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-2.208511514624562.99537516795235e-34
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA-2.560648733281291.11475235790791e-26
5Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN-2.143294648992283.69129632123538e-31
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-2.498420593756451.11976273482488e-33
7Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN-1.192838526128813.11198195863011e-15
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-2.31993438469383.40228404205107e-45
9IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 14h2.073098938355080.00249666105851422
10IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h2.267352655088010.000159051373577831
11IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h1.929053569541990.000621746705055743
12IR64 // panicle // Dawn--/--IR64 // panicle // Dusk1.582574262799980.027027601656804
13Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-2.191061214784110.0314283022466884
14Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days"2.359013235469556.33644102789912e-05
15Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA-2.029483178789571.82280411456597e-28
16Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-3.074468893334156.01424631900445e-64
17Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-2.492825374824581.19294238186918e-56
18Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day2.29742905527340.00455664006434999
19Nipponbare // panicle // AM--/--Nipponbare // panicle // PM3.772626546019230.00689362598319951
20Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-2.268996899710512.43483280861999e-33
21Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-2.769213718991994.82943439250718e-67