Chr:
Chr9
Start:
7870936
End:
7872473
Strand:
-
Ref_name:
OSA-LNCN7575
Sequence
(OSA-LNCN7575.1):
UCCUCUUCUUCUCCAUCUGGGCCUGGAGGUUCAGGUCAUCUUCCGACCUGGAGCUCCGGGUUCCCUGGCUCGACCCGGACGAGGGAGCUUACUGAGAAGACAUAGAACCAGUAGAGGAAGACAACAGAGAAGGACUGAACAAGCUGGGUUAUGGCUGGGCCAGUCAUAAAUCUAGAGAGGAGGUGCUCAGGGAUGAUGAGCAACAACAUCUACACAACUAGGACAACUUCUCUAGGAGUCUAUCAUCAAGAACAGAUAAAAACUCCUUCUUACCUUGCAAAAAGUUAUAUGUUUGUUGUAUAUACUUAUGCAGGGUAUGUCAACAAAGGGAAGAUUGAUGACCAGCGAAAAUUUCGGCAGAACCUCCCCUUAUAAAUUAACCGAUUUCAGAGAAAAUUUUGGCAGAACCUCCCCAGGAAUAUUGAUGGACAGAGAUGAAAAUUUUGGCAGAAUCUCCCCUUGGAAAAUGGAUGGCCAGAGAAAUUUUUUGGCAGAACUUCCCCUCUGAACACUGAAGAGAUUCAGAAACAAAGACUGAAACUUCAGAGGAAGAUUGAGCUGAGUUGGCAGGAUGAAGCUGUCAAUACUCAAAGGCAGUAGUAACAACUAGGAAAUAAGUGAAGAUCUGAAUAUGAGCAAAAAGAGCUCACUGGAAGAAAACCUAACAAAGGAGCUGGGGAAGAGGGGAAAAGGGAAUUGAAGCUUGGAGGAGGGGGCCAUUUAUAGCUGAAAAAUGAUGGGGUUUUGGAGUGUGAAAAAUAUUGCAAAAAAAUAAAAUACUAGUGGAGAGGAAAAGGAGAUAAAAGUAGAGACAGAUGUGUUUGGAAUCUUCUGCAGCAUCUGCUGGCAAUUGGGGGAAUCAUGUGGGCGCCUGAUUUUCUAUGUUCUUGGUUUGAUUGCCUGUGACACCUGUGGUUUCUGAACACAGUGCUUUUAAUUUGAUGAUGAUAUAUCCCAAGUAGCGUGCGUUUCAGGAACUCCUAUGUGGCUACUGCUCCUUCAAUCAAAAUAUAAAGCAUAGUUUGACUAAAGAAAUGUUCAGAGUAGAACUUUGCUGAUUAGAAGUCCUUACAGAAGUCCUUUUGAGUAAAAAUUGAGUGAAUAUUUUCUAAGUAUUUGUAUAAUUUUUUUUAUGUAUUACACAAGUGCGUAGUAUCAUUCUUGCUUCAGUGUCUCGGUCACUUGCCUUUGGCCUCUGCUGAGCAGAAAGGGCAAUAUUCAUUCAGAG
Sequence
(OSA-LNCN7575.2):
GUAUAAAUAAGUCUUGUAAUUUCAAAAGGCUACAACUACAGGGAGCUUACUGAGAAGACAUAGAACCAGUAGAGGAAGACAACAGAGAAGGACUGAACAAGCUGGGUUAUGGCUGGGCCAGUCAUAAAUCUAGAGAGGAGGGUAUGUCAACAAAGGGAAGAUUGAUGACCAGCGAAAAUUUCGGCAGAACCUCCCCUUAUAAAUUAACCGAUUUCAGAGAAAAUUUUGGCAGAACCUCCCCAGGAAUAUUGAUGGACAGAGAUGAAAAUUUUGGCAGAAUCUCCCCUUG
Sequence
(OSA-LNCN7575.3):
UCCUCUUCUUCUCCAUCUGGGCCUGGAGGUUCAGGUCAUCUUCCGACCUGGAGCUCCGGGUUCCCUGGCUCGACCCGGACGAGGUCCCACUCGACAUGGGAGCUUACUGAGAAGACAUAGAACCAGUAGAGGAAGACAACAGAGAAGGACUGAACAAGCUGGGUUAUGGCUGGGCCAGUCAUAAAUCUAGAGAGGAGGUGCUCAGGGAUGAUGAGCAACAACAUCUACACAACUAGGACAACUUCUCUAGGAGUCUAUCAUCAAGAACAGAUAAAAACUCCUUCUUACCUUGCAAAAAGUUAUAUGUUUGUUGUAUAUACUUAUGCAGGGUAUGUCAACAAAGGGAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
44.31%
ME_num:
MEP:
40.24%
HE_num:
HEP:
15.24%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.87
Avg Expression:
10.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 2.41906933003364 | 0.00716545347821577 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.68369133156426 | 0.000170054568171197 |
| 3 | IR64NIL // root // control--/--IR64NIL // root // Al | 1.27037771343873 | 0.0400515880663984 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.70718394375239 | 1.20265792540573e-13 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 1.81929388534848 | 0.00596217051388011 |
| 6 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -1.18315097983063 | 0.00785531149216539 |
| 7 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -2.39310674566514 | 1.75065399070398e-05 |
| 8 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | 1.3994756092508 | 0.0112345191388064 |
| 9 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -1.30937507399273 | 0.0257571260562496 |