Chr:
Chr9
Start:
7411060
End:
7412917
Strand:
.
Ref_name:
OSA-LNCN7565
Sequence
(OSA-LNCN7565.1):
GUGAGAUCUCUAUCGACUAACAUGCAUGUACUCUUUUGUUUGAUUUCUUCAAUUCCAGGCAGAUAGAAAGGGACAUGCAUGCAUGUUUCUCCUAUUUCAGAUUAAUUUAUAAUGUUAUAAUGUAUUUUAUCUACUACUCCAGUAGCUAAAUUAUCAUAUCCUAAGAUGGACAUAUUAUAUACACUUGUUUCCUUUCAUUCGUUUUCUCAGGUCAGCAACAGCAACAAAUUUUAACAAAAUAUUAAAAAAUAUUAUAUCUCGUACUAGAUUAAUUUAUUUUCGAACGAGAUAAUACCAGCUUAAUUGGAUGCUUGCAGCCUUUAGCUACUCAGAAUAAUGUUUGCUAUGGUAUCAGCAAUAAUGUUUUAGUCAUUCAGUCCCGCAGGUCCGUCCGUCGCGUCUAUUGUCAGAAUAAGUGAAUUCAAAAGUGUCAUGUCUUGUAUGGUGUGCUUUUGUAUUGGUUAUCCUAUCUUAAAACCUUAAAUAACAUGUUGCAUUGGAUGAAUGAAUUCUUUUAUUCAAAUUCUACUUACUACUCAGUACUCUCUCCGUCUAUCCCAAAAUACUAUAAGAGAUUUUGAUAUGACGUGACACAUCCAACAAAUCUAGACAUACUUAUGUUAAAAUUUGCUAUAAUAGGAUAUGUCGCAUCCUACUAAAAUUCCUUAUAUUUAGGGACGGAGGGAGUACUUCUGUUUCGAAGUGAGUUCAUUUUUAUAUUAACCAGCGUCAUAAAAAAAGUAUGUACAUAUAUUAUCGUUUAGUUUACUAAACGUUACUACCUCUGUUUCAAAGUGAGUUCACUUUUACAAUAACCAACAUCGUAAAAAAAACAAAGUAUGUAUAUAUAUUAUCCUUUAUUUACUAAACUUUCCAGUCUACAUAUAUAUGAUGACUUUACAUAUAAUACAAAGCGCAAAACACAUUUUAUAUGUGACAAUGACAUGAGCAAAAUAUAGACUAGUGUGCAACAUUGCACAUAUAUCUAUAACUAAUAUAAAGAAUCGUAUUUUUCCGUUCGUCACCCCCCAAAUCCCAGUCGGUACUCCAUCACCCCCACUCAAAAAAAAUUCCCAAUCGAAAUUCAAUCACACAAAUAAAAUUAGAGGAAGCAUUAUACACACAAAUAUAUCAAAAAAAAAAAGAUCGAAGGGGAGGUCGUCGUCGAACCGCCGCCGCUGCCGCCGCCAGCGCAGGGACGCCAGGCCGCCGCAGCACCCCUCCCGCUGGAUCCGGCAGAGGGGAGGGGCGCCGCCGCCGCCACCUCCCCUCCCGCUAGAUCCGGCGGAUUGAAAGGCAUCGGUGCCCCUGUCCGCCGUGUCCCCUCCCGCCGGAAGGGAGGGCGCCGCCGCUCGCCUCGCUCGAGCACUCCCGGGGCCCCAUGGCGAGGAAGAGGAGGUCGGCUGCUGCUCCACGCCGCUGCCCGUCGCCGCUCAAGGGGAGGGGGAGGGGGGCUCGCCAGUCGCUGCUCCGUGUCGCCUCAGCCACUCGGGGGGCGCCGCUCGCCGGUCGCCACUCCAUGCCGCCGCAGCUGCUCGGGGGGAGGGGGAGGGGGGUGCCACUCGCCGGUCGCUGUUCCGCGCCGCCGCCGCCGCAUCCGUCGCUCGGGGAGAUUGGGGGCGGGGAGGGAGGGGGAGAAUGAAUCCUAGGGUUAGGGUUAGGGUUAGGGUUAGGGUUAGGGUUUGGGUUUGGGUGUAUUUAUUUAGGUUAGGAUUAAUUUGGACCGUCCAUUUGAUCGGACGGUUCCAGUUGCUCCCGCGUCGGGCCACCGGCCUAUUGGGCCACCAAAUAGAGGACGCAAAAUGGACUUCAACGGAGAAAGGAAAUAGGCCAGACACAUUGAAUAGAUAAAAGGGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.58%
ME_num:
MEP:
67.68%
HE_num:
HEP:
8.54%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root_meristematic_zone
Tau :
0.70
Avg Expression:
5.82
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.30788540706164 | 0.00163882577934863 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.55471123865264 | 7.5622979049203e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.79682846979196 | 0.0445199411968462 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.39754473435853 | 0.000574816489427468 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.18770187830273 | 0.00467740270612405 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.06648427714646 | 0.000812786570420317 |