Chr:
Chr9
Start:
7016011
End:
7017376
Strand:
-
Ref_name:
OSA-LNCN7562
Sequence
(OSA-LNCN7562.1):
CAGACGAUAGAGAUGAGGCCAAACUCCAGAGAAUCGAUUGGCACAUGGAUUAGGCUGUGAUAACUGAUAAGGGUUUGUAACUUGUUCCCCGCACUAAAAACAAGACAGCUCAUUAGAGUAUUAAUUAAGUAUUAACUUAAAACAAAUUAAAAGAAUAUUAAGUUAAUUUUUAAAAGAAACUUUUUAUACAAAAUACAUCGCUUAGUGCUUACUAGCUCCGUCCCAAAAUAUAACAACUCUUGACUAUGAAUCUAGACACAUAUUAUUAUCCAGAUUUAUAGUUAAAAAUAUUUAUAUUUUGGCAUGGAGGGAGUACCUGUGAUUCCAAACACAACCCGUAGAGAGUAGAGAUAGUAGAGGUAAGCAGUGUUCUUGUGCUUGAAUAAGUUCACAUUAGGUCACUCUAUUGGUCACCCAGUCUAAUUUUCAUCCUCAGUCCAGAAAACCGGAUACAAUACAUCCCUCAACUUUACAAAACCGUGCAGACGAGAUCCCUCGGCAGUAUUAUAUCUGGUUUUGGAUGACGUGGCGCCUACGUGGCUGGUUUGACUAGAUCCUCGUCCCACGUGGUAUUGACGUGGCGCUUCCGUGGCAAUUGGAUCCCUGAAAAAUAAUAAAAAAAACAUGGGACCCAUAUGUCAGCUAAAAAAAUUAAAUGGUGGGGCCCACAUGGGCCCCACAUGUCAGCUACUCCUCCCUUCUUCCCCAUCCAUUCUCUCUCUUCUUCAUCGUCCUCUCUUCUUCAUGUGCGCAGGGGAAAGGAGGCGAGGCGACGGGACCAUCCCCCAAACCGACACCACCCCCAGCGCGCCGCCACCGCCGGCAUCUUCAUCUUCCUCCUCGCCGCCGCCGCUGCCAGCCGGCCUCCUCGCCGCUCCGCCGCCCAGGAGC
Sequence
(OSA-LNCN7562.2):
CAGACGAUAGAGAUGAGGCCAAACUCCAGAGAAUCGAUUGGCACAUGGAUUAGGCUGUGAUAACUGAUAAGGGUUUGUAACUUGUUCCCCGCACUAAAAACAAGACAGCUCAUUAGAGUAUUAAUUAAGUAUUAACUUAAAACAAAUUAAAAGAAUAUUAAGUUAAUUUUUAAAAGAAACUUUUUAUACAAAAUACAUCGCUUAGUGCUUACUAGCUCCGUCCCAAAAUAUAACAACUCUUGACUAUGAAUCUAGACACAUAUUAUUAUCCAGAUUUAUAGUUAAAAAUAUUUAUAUUUUGGCAUGGAGGGAGUACCUGUGAUUCCAAACACAACCCGUAGAGAGUAGAGAUAGUAGAGGUAAGCAGUGUUCUUGUGCUUGAAUAAGUUCACAUUAGGUCACUCUAUUGGUCACCCAGUCUAAUUUUCAUCCUCAGUCCAGAAAACCGGAUACAAUACAUCCCUCAACUUUACAAAACCGUGCAGACGAGAUCCCUCGGCAGUAUUAUAUCUGGUUUUGGAUGACGUGGCGCCUACGUGGCUGGUUUGACUAGAUCCUCGUCCCACGUGGUAUUGACGUGGCGCUUCCGUGGCAAUUGGAUCCCUGAAAAAUAAUAAAAAAAACAUGGGACCCAUAUGUCAGCUAAAAAAAUUAAAUGGUGGGGCCCACAUGGGCCCCACAUGUCAGCUACUCCUCCCUUCUUCCCCAUCCAUUCUCUCUCUUCUUCAUCGUCCUCUCUUCUUCAUGUGCCCUCCUCGCCGCCGCCGCUGCCGCCGGCAUCUUCGUCUUCCUCCUCCGCCAUCACUGCCUGCAUCUUCGUCUUCCUCCUCGCUCCCACCGCCGCAGCAACCGCGGCAAGCAGGCCGGCGACGACGACGUGGAGAUGGCCGAGGGGAGGAACAACAAGGUCGCCGACGGUGGCGGGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
43.29%
ME_num:
MEP:
19.11%
HE_num:
HEP:
37.4%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.74
Avg Expression:
15.12
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.89091693072001 | 0.00433383023575714 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.74401718755751 | 0.007122032051149 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.57929858150636 | 2.13732102507167e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.07105967282985 | 2.90317401211104e-08 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.22513927065951 | 0.00686324276788367 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 1.54820446920333 | 0.0159660623656571 |
| 7 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | -2.49586003965638 | 1.57723784101685e-08 |
| 8 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.78604398466209 | 2.66629814257805e-24 |
| 9 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.73130140552902 | 0.0366841313753783 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.39301431282645 | 1.50300610685933e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.07180220436832 | 0.000390554531003424 |
| 12 | 9311 // leaf // control--/--9311 // leaf // salt | 1.93090375339381 | 6.06811867498349e-05 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.14355075723431 | 0.000116076790743122 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.08487344712007 | 0.0314041803434601 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.59791084899246 | 3.42676311603943e-09 |
| 16 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -2.96442648921021 | 0.000267516686546524 |
| 17 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -2.96454958319209 | 0.000274942682163653 |
| 18 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -2.96460262950125 | 0.000268787147517143 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.02252796856412 | 0.0120100081735676 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 2.00276358850874 | 0.0017392746569003 |
| 21 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.63020765303977 | 0.000746923563555142 |
| 22 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.90907462205613 | 1.26906982097024e-18 |