Chr:
Chr9
Start:
6972858
End:
6975464
Strand:
+
Ref_name:
OSA-LNCN7561
Sequence
(OSA-LNCN7561.1):
UAUUUCUAUUUUAAGUAAAUAUAAUUAUUAAAACCAUUUUAAUGUAUAUGUACAAGCACUAACUACACGAUCGAUUUUCCUGAACGCCCCCCUUUUUGUUUCCAUGCGGUUUGUAAGUAGAACCACACGGGAAAAAAAUAGAGAACCGAUGCUGGGGUGUCGCCGCACACCCCGCACAGGCCCACCAUUUAACCCACCUCCCACCGCCCGCUCCACCAACCACUCUCCCACUCCACUCCACUCGUCUCCUCCCACUCUCCUCUCCUCUCCUCUCUCUCCCUCCCUCUCCCUCCCCUCCACAUCGACAGCACGGCGCACGGCAGCGGGCGACAGCGGCGGCGGCGCGCGCUCCCUCCCUCCCCUCCUUCCCGUAGCAGAUCCGGCGAAGGGGGGGCUUGGGGGCGGCUGAUCCGGCGGCGGCGGCCGCGGGCGGCGGCGGCGCGCGCCCCCUCCCCUCCUUCCCCUUGUAGAUCCGGGGAAGGGGGCGGCUGAUCCGGCGGCGUGCGGUGGGAGGAGAGCACGCGGUGGCGGCGGCGGUGGCGGCGCGCGCCCCCUCCCCUCCCUCCCCAUGCAGAUCUGGUGGCUCUCCUCCCCUCCCUUGUAGAUCCGGCGGAGGGGAGGGGGACCAGCGGAGCAACGGCAUGCGUCGGCGACCGGCAACCGGAUCUAUCUCUCCCCCUCCUCUCUUUGUUACUUGUGUUUUUUGUGUGUGAUUUGUUCAUAUGAGAUGUGUUCAUGUGAUGUGUUCUUGUUGAUGUGUGAUGCUUCUUGUGAUGUGUGUUCUUGUGAUGUGAGAUGUGUUCGGCGGUGGGCGACCGCGAGGGCGACGGCGGCGGCGGGUGACCGCGAGGGUGACAGCGGCGGGCCUCGGCUAGACGGCGGCGGAUUAGGGUUAGGGUUUCUUUUUUCUUUUUUUUUUUGUUUCUUUUUUUUUCUCCAUGCGGACGGCUUAAGCGCUCGCACACGAAAAUUGGUUUUCACGUGCGGGCGCGCCACCCGCACGUGAAAAUCGUGAUUUUCCAGACGACUGGGUGCGUGCAGGCCGCCCACCCGCACGCGAAAAUUGGCUAGCCCGCACGGAAAAAUUGGCGCUGUAGUAGUGAAACUUUAAAUUUAUCAUGGAUCCGAGAGAUCCGAAGUUGUGCUGAAUUCAUGUGGCAUGAGUUUAAAUGCUUUUUCGUGGUGUUUGAGUGAUUGAGUCUAUAGGUUCGAAUCAAUUAUUCUUGGGAAGUUUUAGAGAACCCGGCUUCUAGGUGGUUCACCAACUCGGACUGUCUUGAAUUUCAGAAGCAUGCAGUAGCUAGAUUUUUUUUAUAGAUAAUAGAAAAACAUCCCGGCCUUUACUCAACAGCUACAACCAAUGCGGUAGCUAGAUAUCAGUUAAGUAUAUUUGUUUUAAGUUUUCUUAAUUUGAAAUUUUAGGUUGAUUCAGCUGGGAGGUCUAGCAAGCAAAGUUUGCUUAAGUAUUCAUGCUCAAAGUGCUACUCUAGCGGUCUAGCCAUGAUAUAUAUUUAUGAUACAUGUAUAUACUUAUAUUUUUGGAGGGUCGGAGUAGAUGACAUAUAAAUUAACUGUUCGUACGAUAGUUCAUUAGUUUGUUUAGUUAUGUGUAUCGCGUGUACGUUUAUAUAUAUAAUUAAUGGUUUAAUUUUAUAAAUAUUCUCUCCUUUUCGCAGGCCCCUCACCAUUAGCUUCAUAAACGAAACAAAUCUUACUGUAAAGUUAAUGGCCACCAAAUCUUAGAGCUAAGCAUGUAAGUGUGUCAAAUCAUUACCCACCAGUAAUUAUUAUCUAAAGUAUUUUAAAUGACAUGUAAGCUAGUGUGCCACAUCAUCACCCACUAGCAAUUAUUAUCUAGGUAUUUCAAAUAUUAUGCAAACAUGAUAUAUCAUUUAUAAUUUUGUUGUAUUUUUAGAACUUAAUCCGCAAGCAAUGUCAAAUCAUUAUCUCCACAUUAUUUUCACAUUAUUUAAACAUAACAUCUAUCAUUUCUAUAAUGUAUAAUAUGCAUUCAUCAAUAUAUAUAUCCCGUAGUAAAGCACGGGGUAUCAACUAGUAAAUUAAAUGUGAACGUCAACUUUCUGGAUACCAGGUUAACGGGUUAAAUAAAUGCUCGUGUAAAUUGAAUACACCAGGCAAACAAUGACGUAUGCGGCCUGUGACAAUUGUUUAAAUUUACCUGUGUGGCGAGUCUUAUACGACCACUCGAAAUAAUGGUGAUUUCCUUGACGCACCGACUAGAACUUGGUGUAUAUUUACAUGGACGACGUGUUACUGUAAGCCGCCCGUGUAAAUACAUUUUCCAAGCCCGUAAAUAUGGUGUUGUCGUCUUGUAUUCUUUGCGCCGUUACUUUAAGUCUUCAAGUCUUCAGCUACGUCCACUACCAUCGAUUUUCACGCAUAUUCCGGUAACAUCUCAUCGGAAAACGAACAGUCUGACACCAGUUAUAUCCUCCACUACCACCCCAUGACUCCUCAGCUCCCACAUCUUGUUUAUUUUUGGUAACGUGGAUUUUCUCUCGCAACGAUCUCUAUCUCCUCUCGAUCACACCUUUCUCUAAUCACCAGCAAUGCCGAACUCACCAUAGAAGCAGCUGUACAUCACCA
Sequence
(OSA-LNCN7561.2):
CUCCACUCCACUCGUCUCCUCCCACUCUCCUCUCCUCUCCUCUCUCUCCCUCCCUCUCCCUCCCCUCCACAUCGACAGCACGGCGCACGGCAGCGGGCGACAGCGGCGGCGGCGCGCGCUCCCUCCCUCCCCUCCUUCCCGUAGCAGAUCCGGCGAAGGGGGGGCUUGGGGGCGGCUGAUCCGGCGGCGGCGGCCGCGGGCGGCGGCGGCGCGCGCCCCCUCCCCUCCUUCCCCUUGUAGAUCCGGGGAAGGGGGCGGCUGAUCCGGCGGCGUGCGGUGGGAGGAGAGCACGCGGUGGCGGCGGCGGUGGCGGCGCGCGCCCCCUCCCCUCCCUCCCCAUGCAGAUCUGGUGGCUCUCCUCCCCUCCCUUGUAGAUCCGGCGGAGGGGAGGGGGACCAGCGGAGCAACGGCAUGCGUCGGCGACCGGCAACCGGAUCUAUCUCUCCCCCUCCUCUCUUUGUUACUUGUGUUUUUUGUGUGUGAUUUGUUCAUAUGAGAUGUGUUCAUGUGAUGUGUUCUUGUUGAUGUGUGAUGCUUCUUGUGAUGUGUGUUCUUGUGAUGUGAGAUGUGUUCGGCGGUGGGCGACCGCGAGGGCGACGGCGGCGGCGGGUGACCGCGAGGGUGACAGCGGCGGGCCUCGGCUAGACGGCGGCGGAUUAGGGCCCCUCACCAUUAGCUUCAUAAACGAAACAAAUCUUACUGUAAAGUUAAUGGCCACCAAAUCUUAGAGCUAAGCAUGUAAGUGUGUCAAAUCAUUACCCACCAGUAAUUAUUAUCUAAAGUAUUUUAAAUGACAUGUAAGCUAGUGUGCCACAUCAUCACCCACUAGCAAUUAUUAUCUAGGUAUUUCAAAUAUUAUGCAAACAUGAUAUAUCAUUUAUAAUUUUGUUGUAUUUUUAGAACUUAAUCCGCAAGCAAUGUCAAAUCAUUAUCUCCACAUUAUUUUCACAUUAUUUAAACAUAACAUCUAUCAUUUCUAUAAUGUAUAAUAUGCAUUCAUCAAUAUAUAUAUCCCGUAGUAAAGCACGGGGUAUCAACUAGUAAAUUAAAUGUGAACGUCAACUUUCUGGAUACCAGGUUAACGGGUUAAAUAAAUGCUCGUGUAAAUUGAAUACACCAGGCAAACAAUGACGUAUGCGGCCUGUGACAAUUGUUUAAAUUUACCUGUGUGGCGAGUCUUAUACGACCACUCGAAAUAAUGGUGAUUUCCUUGACGCACCGACUAGAACUUGGUGUAUAUUUACAUGGACGACGUGUUACUGUAAGCCGCCCGUGUAAAUACAUUUUCCAAGCCCGUAAAUAUGGUGUUGUCGUCUUGUAUUCUUUGCGCCGUUACUUUAAGUCUUCAAGUCUUCAGCUACGUCCACUACCAUCGAUUUUCACGCAUAUUCCGGUAACAUCUCAUCGGAAAACGAACAGUCUGACACCAGUUAUAUCCUCCACUACCACCCCAUGACUCCUCAGCUCCCACAUCUUGUUUAUUUUUGGUAACGUGGAUUUUCUCUCGCAACGAUCUCUAUCUCCUCUCGAUCACACCUUUCUCUAAUCACCAGCAAUGCCGAACUCACCAUAGAAGCAGCUGUACAUCACCA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
26.02%
ME_num:
MEP:
42.07%
HE_num:
HEP:
31.71%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.77
Avg Expression:
29.93
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.03905482941008 | 0.000123451072756918 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.01763442924717 | 2.37880990595805e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.08228398243005 | 0.000323400876459591 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.20905322722064 | 2.07321993869216e-09 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.24074377572585 | 3.52626539073276e-05 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.2835726471273 | 0.0213016518265118 |
| 7 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.25689316884744 | 0.038350680206831 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.49210584100397 | 1.62658567312226e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.79137487936153 | 7.4517069058027e-11 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.59818125642726 | 6.36514097413936e-06 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.07330187065014 | 0.00641867438754858 |