Chr:
Chr9
Start:
6529347
End:
6530737
Strand:
+
Ref_name:
OSA-LNCN7538
Sequence
(OSA-LNCN7538.1):
GAUCCGUCACGGGGGGAGGGCGGCCAGCAGCCGGAUCCGUGCGGGGACGGCCGCGGGCCGCCCGUCGUCACCAGCCCGCCCGCCGGAUCCGCCGCCCGCACGCUCUCGUCGCUGCCAGGGAGGGGAGGGGAGGAGCUGUGGCCGCCCGUCGUCAACCGCCCGCCGGCCGGAUCCGCCGCCCGUGCGCUCCCGUCACCGCCGGGGAGGGGAGGAGCCGCGACCACCAGUCAUCGGCCGCCCACCCGCCGGAUCCGCAGCCCGUGCGCUCCCGUCGCCGCUGGGGAGGGGAGGAGCCACGGCCGCCUGUCGUCACCCCCCCGCCUGUCGGAUCCGCCGCCCGCGCGCUCCCGUCGCCGCCGGGGAGGGGAGAGGAGGGGAGGGCAGCCGGUUCCCGCACUGGAUCCGUGGCGGGGGGAGGGCGGCCGGCCGCCGGACCCAUGCGGAGACGGCCGCCGCCGCCGGAUCCGUGCGGGAACGGCCGACGCCAGCCGGAUCCCCCGCCUCCCCCGCCGCGCCAUCGUCGCUGGUGCCGUGCCGCCACCGCCGCUGCCACGGAUGCCGCCGCCUCCGCCUCGCUUACCGAGGGCGCCGGCUUCGCCGAGGAGGGAGAGGGGAUGGGGAGGAGGAUAGAGAGAGGGAGAGGGAGAGGGAGAUGGAUGGAGAGGUGGUUGGGAGGGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
79.27%
ME_num:
MEP:
19.31%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.91
Avg Expression:
2.04
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -4.97777953438299 | 0.0169797821156768 |
| 2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.46402976857663 | 1.0778221744104e-09 |
| 3 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 4.62412866975289 | 2.13859127156475e-10 |