Chr:
Chr9
Start:
6485644
End:
6507646
Strand:
+
Ref_name:
OSA-LNCN7536
Sequence
(OSA-LNCN7536.1):
UUAACCAAUAAUGAGUUUAUCUAUUUCAAGGAACAAAAUCGGAUAAAUAUGUAAACAUAGUGUGUGAUACAAUCAUCUCUAUCAUUGCCUCUAGGGCAUAUCACUAACAGCCAGCUCCCUCAGCUUCACUUCCUGUGCAGCGUCCACUCCUCGGCGUGCUGGAGCCAGAAACGGAAGAUGAGGCGUCUGUCGUCUACGGCGAACAGCCCGAUUCCGCCGGAAUCGCGCGCCAUCUCCAUGACUGUUAAGCUCCAUUCUUUGUUGUACACUUCAGCUGACACCCGCACAUACCUGGGUAGCUCCACCAGCGAUCACUCCAUCGUCUUGUGUCGAGCAUCGGUGAUUAACU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.44%
ME_num:
MEP:
36.79%
HE_num:
HEP:
10.57%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.95
Avg Expression:
13.67
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.92287799320279 | 0.000140949099882344 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 7h | 3.88774401343019 | 0.00370038776544273 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.94603047800029 | 0.000371077299216517 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.78796038969276 | 0.0212018127094169 |
| 5 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 5.52700476401316 | 4.788669142948e-10 |
| 6 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 2.33490062246761 | 2.40462559676969e-05 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 2.36629563066496 | 0.00128759231199415 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.87874850114797 | 4.29686243549835e-13 |
| 9 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 4.42861237244682 | 8.03129519216466e-10 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 3.56265222546737 | 2.79039771975613e-09 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 5.94544351308364 | 8.78895069522869e-11 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.84672796873451 | 0.0440505734453292 |
| 13 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 7.20894205197139 | 0.00117593427923534 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 4.76207478401738 | 2.96329954208252e-08 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 3.52165315495298 | 1.1129760428076e-08 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.82762325818349 | 0.0341436277278769 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.44575801789473 | 0.000274766176405519 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 2.59507522209358 | 0.027051997534547 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 2.97445791252181 | 2.79585511178412e-06 |
| 20 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.97527570184788 | 0.00251110843058377 |