Chr:
Chr9
Start:
6396491
End:
6403543
Strand:
-
Ref_name:
OSA-LNCN7534
Sequence
(OSA-LNCN7534.1):
CAGGUACAAUAGCAGGCUAUAAGCCAGCUGCAAACAUAUUUUAAGAAGAUAAAUCAGGAGAGAGAAGAGCAGCGGGCUACAGAUUUGUAGCCAGCUGUAGCACGAACUCUAAGACGAAGUGUGUCUAUGAUAGGUGGGACUAGAUAUUAAUAGUAUAGUAUGUAACUAUUAUAUGAAUGAGCUAUUAAAUUGAUUAUACAUGAAUUGGAGGAUGGCUAUACUAUUCAACUUGCUCUUACAUUGCAAUAAGCUUUGUACUACCUCACUUUAUCUUUUUCUUUUUUUGAGAAAAAAAAUAUCUCUAGGGGUCCCACCACGAGCAGCGCAGCAACCGCAAAAAAGAUACGGCAUCGGCAUCAGCAGCCAGCUUGCACCCCCGGGGGCCCCACACCUUGCUGACCUUGGGCCGUCGACAGCCACAAGAUGUUGGACAGGCAGGCUAAAUCCGUCUUUUCAGGCAGACCAGCAGGAGGUAGAUUCACCCGACUGCAAAGAACAAUUCAACAAAUAAAAAAAGACCCACCACCGCUGCCGCCGGCCUCUCCCUCCGGCCGACGACGGCUCUCCUCCUCCAUCCGCCGCUGCCCCACAUGCAUCGGCGCCGUCGUCGUCGUCGCGUCAUGGUCGUGGUAGUCAUCGUCGUCGUCGCGUCGGCGCUGUCGGUGGGGAGGAGGGAGGAGGGAGCCAACAGCAAAGAGGGGAUCGAGCCGGCGGCGGAGGCGGGGAGGAGGGGAGCUGGUGGAUCCGCAGCUUGGCGACGUUGCGAAGGUCGUCGUCGUCGUCGAGGAGGAAGACGGCGGCGAGGAGGGAGCUAACGGCGGAGGCGGGGAGGAGGGGAGCCGGUGGAUCCGUAGCUUCGCGGCGUCGCGAAGGUCAUCGUCGUCACGGCCGAGGGGAGUCGGCGGCGUCGCGGUCGUCGUCGUCGUCGAGGAGGGAGCCGGCGGCGGAGGCGGAGGAUUUCUCCUAAGAGUGUGUGUGUGUGUGAGAGAGAGAGAGAGGAGGGGAGGGAAAUGAGUGGUGGAGAGGAGAGGAUAAGGAUGGUGGAGGAGAAGAUAAGGAUGACUAGAUUUUUUUUUUGAGGCAUGAUUUUUGCAAGCGGACCUAAUAAAGUUUCAUCUGCGAAAAUCAUAUUUUUUUUCAGGUGAGUCACUUAAGAGGUCCGCCUGCGAAAAUAAAUGUAUUUUUGCAGGCGGACCUCUUAAGUGGUCCGCCUGAAAAAAUUGAUUUUCACAGGCGAACGUUGAGCUCCACCCCCGGUUUACAUUUUCCUAGGCGGCCAUUUAGCUCUGAGGGUCAAAUCCGCUUGGAAAAAUAAUCUCCCAACAUCUGCAAAAAUGCUUUUUCUAGUAGUGAUGGGUAUUAAGAAAGUAAUUAGAAUUAAACGAAAAAAGGUUGUGAUUGGUUGAGAAAUGAAGGUAGGUGAGAAAAUUGAAUGGUAGAGGAUUGUUAUUGGUUGAAAAGAGAAUGUUGGUGAAGAUGUUA
Sequence
(OSA-LNCN7534.2):
AUAAGGAUACCAUCUUGCGGCCAUGUUCCAUAGCCAUCGACUUAGAAAUCGGGGUCCCACCACGAGCAGCGCAGCAACCGCAAAAAAGAUACGGCAUCGGCAUCAGCAGCCAGCUUGCACCCCCGGGGGCCCCACACCUUGCUGACCUUGGGCCGUCGACAGCCACAAGAUGUUGGACAGGUGGGCCCCACACGAUGCCUCCUCCGACGUGUGCAGAGAAAAAUAUCUCUAGGUUCGCUGAACUUGGCGCUCGAUGUGUAGUACACGGCAAUUUGCUGCGCGUUCUCGGCACACGACAUUUUGGACCAACUUGCUUCUCUCCACUUGGCUGGCUGAAUUGAUUAAUUAAUUAAUUAAAAGCCAGUG
Sequence
(OSA-LNCN7534.3):
AUAAGGAUACCAUCUUGCGGCCAUGUUCCAUAGCCAUCGACUUAGAAAUCGGUAAAUAUAUAUGUACUUCUUGUUAUCAUUCUAAUCCAUUGAUCACAACUAGGGUGACUAUACAAGUUAUUAUUCCCAAUCUCUUAUCGGAGUUCUAUUCAGGAUGAUAUCUACAACAAGACUCGUGGAGCCCAGCUGAUCUAAAUCUUGGGACUGGGACACCUAACAUCCACGAAAAAGAUACGUCUCAUGCUGCAUGCAUUAUCCUCAUCAGCGUGUUGCACAACUUGUUUAAGCUAUAGGUAACACAUAGACUAAUCGUGCUACUAAUUCCGAUAAAAACACCUACGCAAGCCAUGACAAUUCGUUAACACGCAUGAUCAUUUAAUUUGUAACUUUCCAAAAAUAUCUAUAUAGCUACUUGUGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.35%
ME_num:
MEP:
14.43%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
anther
Tau :
0.95
Avg Expression:
7.49
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.81006913768964 | 0.0389373591337744 |
2 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.69047221317891 | 2.76760755199566e-11 |