OSA-LNCN7526


Function Link


Basic Info

Chr:

Chr9

Start:

5883070

End:

5885273

Strand:

-

Ref_name:

OSA-LNCN7526

Sequence
(OSA-LNCN7526.1):

GCCGUGAACAACACCAAUGUAGCCAUAGAAUUGUCAGAGCUGGCCGAAUAUAGGACUUACCCCUUCACCGGAGAAAGAAAGCCGAUGCAGCCCCGCAUCAGGUGCCAAGUUCCACUCGUUGAUAACUAAAACCCCGGAAAAGAGGGUGGCGAUGCGCCGAGAGUAGUUGCAUUGAUCGUUGAGAUAGAUUACAGAGACUCCGGGUGUACAUAUUUAUACAUAUGGGUAGAUACUAGUCCAUAUCGAACACGACACAUAUUUUCUAAAGAUAAAAGGAAAGAUAUAAGUCAUGAUCGGACACUAAAUAAACAUUUCCUAAAAACAUUUCCUAAAGAUAGAAGGAAAUGACUGAAUUCUGCCUAGUUAAUAUAUAGAAUUAAGCUACCAUGCCAUAGUUUCUUCUUGACCUCAGUCUCUUCUGGAUAAGUUUCCAUCGGCUGAUUGCGUUCUUUCCUUAACUGAAACCAUUAAAAAAUAUUAUUUCCCUCCGUUUCAGGUUACAAGACGUUUUGACUUUGAUGAAAGUCGAACUGUUUCAAGUUUAACUAAAUUUAUAGACAAAUAUAGUAAUAUUUAUAAUACUAAAUUAAUUUCAUCAAAUCAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUGUCUUGGGUUGAAAAUAUUACUACUUUUUUCUAUAAACUUAGUUAAACUAAAGCUGCUAUUUAACUUUGACCAAAGUCAAAACAUUUUAUAACCUGAAAUAAAGGGAGGAUCAAUUUGACGUUAACAGUGCCACGAGUACAGCCAAACCGCGUGGUGACCGAUGCAAGCAUAAGUAGUAUCGCUCGACGGGCCCGGCUGGACACCGUGGCCGCGCUGGCAGACGCUGAUCCGGGGGGCUCCGUGCAACAGGUUCGCGCACAAGUUAGGCCGACGCAAGCACGGGUAGUGCCGUGUGAGGCCAUUCACAAUGGGACUAGGUGGCAUUCAGCCUCAACCAAAAAGGCGAAUAUUCCUUUGCCUCGUCAUCAAACCGCGCGCGCUCCUCAACUUCGCGUAGCCAAAGUUGGCUUCACGUUCUUCGUCUCAGCGGGACCCACACCACCACUAGAGCAGAGAGGGGAGAGGGGGCAAGGCAACCGAACGCCACGGGAGGAGGGCGCCGAUUGACGCCCGCCACCGCGCAGCCGCCCGACGCCGUCGCCGCUCGUCGCCGUCCCCCGCUCCAAGUCGUACGCCCGCCGCCGACAUGCCGUUGCCGUCCCCCCCUCCAAGUCGUCCGCCGCCGCCAUCCAAUGUGUCUUUUGGUGAGAGGGGCGCCGCAUGGGGGAGAGGAGAGAGAGAGAAAACGAUGAUGACAACGCAGCCACCUUGGAGGAGGACCGGGCCGACACCGGAGAGGGGAGCUCGAGGUCGAUCCGCGCCGCCGCUUGGGCCACGUCACCGCCGCGUCGUUGGGGGUGGAGGAGAGGACGCCGGCGCUGCUCCGCUCGACCGCCGCCGCUCGAAUCCUCCGACCGGCGCCGUCGCCGUCGCCACCCCGCCACCGCUCCGCUUGGCGCCGGCGCCGUCGAGCUGCCGCUCGGCUCUCUGUGGUUGGAAAAGGAAGAGAGGGAGAGAGAGAGGAGAGGAGAGGGGAAAGUGAAAAGAGAAAAGUGGUAUUGGUGGGACCCACUAAGCUUCUUGUAUUGUGGUCUUGCGGAGUUUGCAUUAUAGAACAUCUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGGAAUACCAAAACUUCGUGGAACAUGUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGAAACAUAAAAACUUUCGUGACGCACUGUGAAUGCCCUGACAGGAUCGGGCGGAAGGCCAAGCCGGCAUGAUCGCGUGCGACACUGCGCGGCAAGGCCGGGCGCAGUGAAAGUCGGGGUCAUGCCGCCACGGCCACGAUGGAAGAUAGGCGGGGCUGGCGCUGCGGUGGGGAUUGGAGGUAAUACGGAGAGAGGGAAGAGAAAUGGCGGACUGAUAUAUGAAGCUAGGCCGCUAGGGGUGAUAUAUCGACUCCUCGCUUGGCUCGAACCACAGGUCUCGGCCGAAGGGGACAUCGCCGUUCACAGCCACCCUCCAGUC

Sequence
(OSA-LNCN7526.2):

GCCGUGAACAACACCAAUGUAGCCAUAGAAUUGUCAGAGCUGGCCGAAUAUAGGACUUACCCCUUCACCGGAGAAAGAAAGCCGAUGCAGCCCCGCAUCAGGUGCCAAGUUCCACUCGUUGAUAACUAAAACCCCGGAAAAGAGGGUGGCGAUGCGCCGAGAGUAGUUGCAUUGAUCGUUGAGAUAGAUUACAGAGACUCCGGGUGUACAUAUUUAUACAUAUGGGUAGAUACUAGUCCAUAUCGAACACGACACAUAUUUUCUAAAGAUAAAAGGAAAGAUAUAAGUCAUGAUCGGACACUAAAUAAACAUUUCCUAAAAACAUUUCCUAAAGAUAGAAGGAAAUGACUGAAUUCUGCCUAGUUAAUAUAUAGAAUUAAGCUACCAUGCCAUAGUUUCUUCUUGACCUCAGUCUCUUCUGGAUAAGUUUCCAUCGGCUGAUUGCGUUCUUUCCUUAACUGAAACCAUUAAAAAAUAUUAUUUCCCUCCGUUUCAGGUUACAAGACGUUUUGACUUUGAUGAAAGUCGAACUGUUUCAAGUUUAACUAAAUUUAUAGACAAAUAUAGUAAUAUUUAUAAUACUAAAUUAAUUUCAUCAAAUCAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUGUCUUGGGUUGAAAAUAUUACUACUUUUUUCUAUAAACUUAGUUAAACUAAAGCUGCUAUUUAACUUUGACCAAAGUCAAAACAUUUUAUAACCUGAAAUAAAGGGAGGAUCAAUUUGACGUUAACAGUGCCACGAGUACAGCCAAACCGCGUGGUGACCGAUGCAAGCAUAAGUAGUAUCGCUCGACGGGCCCGGCUGGACACCGUGGCCGCGCUGGCAGACGCUGAUCCGGGGGGCUCCGUGCAACAGGUUCGCGCACAAGUUAGGCCGACGCAAGCACGGGUAGUGCCGUGUGAGGCCAUUCACAAUGGGACUAGGUGGCAUUCAGCCUCAACCAAAAAGGCGAAUAUUCCUUUGCCUCGUCAUCAAACCGCGCGCGCUCCUCAACUUCGCGUAGCCAAAGUUGGCUUCACGUUCUUCGUCUCAGCGGGACCCACACCACCACUAGAGCAGAGAGGGGAGAGGGGGCAAGGCAACCGAACGCCACGGGAGGAGGGCGCCGAUUGACGCCCGCCACCGCGCAGCCGCCCGACGCCGUCGCCGCUCGUCGCCGUCCCCCGCUCCAAGUCGUACGCCCGCCGCCGACAUGCCGUUGCCGUCCCCCCCUCCAAGUCGUCCGCCGCCGCCAUCCAAUGUGUCUUUUGGUGAGAGGGGCGCCGCAUGGGGGAGAGGAGAGAGAGAGAAAACGAUGAUGACAACGCAGCCACCUUGGAGGAGGACCGGGCCGACACCGGAGAGGGGAGCUCGAGGUCGAUCCGCGCCGCCGCUUGGGCCACGUCACCGCCGCGUCGUUGGGGGUGGAGGAGAGGACGCCGGCGCUGCUCCGCUCGACCGCCGCCGCUCGAAUCCUCCGACCGGCGCCGUCGCCGUCGCCACCCCGCCACCGCUCCGCUUGGCGCCGGCGCCGUCGAGCUGCCGCUCGGCUCUCUGUGGUUGGAAAAGGAAGAGAGGGAGAGAGAGAGGAGAGGAGAGGGGAAAGUGAAAAGAGAAAAGUGGUAUUGGUGGGACCCACUAAGCUUCUUGUAUUGUGGUCUUGCGGAGUUUGCAUUAUAGAACAUCUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGAAACAUAAAAACUUUCGUGACGCACUGUGAAUGCCCUGACAGGAUCGGGCGGAAGGCCAAGCCGGCAUGAUCGCGUGCGACACUGCGCGGCAAGGCCGGGCGCAGUGAAAGUCGGGGUCAUGCCGCCACGGCCACGAUGGAAGAUAGGCGGGGCUGGCGCUGCGGUGGGGAUUGGAGGUAAUACGGAGAGAGGGAAGAGAAAUGGCGGACUGAUAUAUGAAGCUAGGCCGCUAGGGGUAUUUCUA


Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

231

LEP:

46.95%

ME_num:

257

MEP:

52.24%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)


Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.86

Avg Expression:

4.24

Tip: OSA-LNCN7526 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN1.450653267821990.0456623947291389
2Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN2.165333789891680.000377880777474216
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN2.449847943284577.76906824079718e-05
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN1.375647717347630.0336092845982654