Chr:
Chr9
Start:
5883070
End:
5885273
Strand:
-
Ref_name:
OSA-LNCN7526
Sequence
(OSA-LNCN7526.1):
GCCGUGAACAACACCAAUGUAGCCAUAGAAUUGUCAGAGCUGGCCGAAUAUAGGACUUACCCCUUCACCGGAGAAAGAAAGCCGAUGCAGCCCCGCAUCAGGUGCCAAGUUCCACUCGUUGAUAACUAAAACCCCGGAAAAGAGGGUGGCGAUGCGCCGAGAGUAGUUGCAUUGAUCGUUGAGAUAGAUUACAGAGACUCCGGGUGUACAUAUUUAUACAUAUGGGUAGAUACUAGUCCAUAUCGAACACGACACAUAUUUUCUAAAGAUAAAAGGAAAGAUAUAAGUCAUGAUCGGACACUAAAUAAACAUUUCCUAAAAACAUUUCCUAAAGAUAGAAGGAAAUGACUGAAUUCUGCCUAGUUAAUAUAUAGAAUUAAGCUACCAUGCCAUAGUUUCUUCUUGACCUCAGUCUCUUCUGGAUAAGUUUCCAUCGGCUGAUUGCGUUCUUUCCUUAACUGAAACCAUUAAAAAAUAUUAUUUCCCUCCGUUUCAGGUUACAAGACGUUUUGACUUUGAUGAAAGUCGAACUGUUUCAAGUUUAACUAAAUUUAUAGACAAAUAUAGUAAUAUUUAUAAUACUAAAUUAAUUUCAUCAAAUCAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUGUCUUGGGUUGAAAAUAUUACUACUUUUUUCUAUAAACUUAGUUAAACUAAAGCUGCUAUUUAACUUUGACCAAAGUCAAAACAUUUUAUAACCUGAAAUAAAGGGAGGAUCAAUUUGACGUUAACAGUGCCACGAGUACAGCCAAACCGCGUGGUGACCGAUGCAAGCAUAAGUAGUAUCGCUCGACGGGCCCGGCUGGACACCGUGGCCGCGCUGGCAGACGCUGAUCCGGGGGGCUCCGUGCAACAGGUUCGCGCACAAGUUAGGCCGACGCAAGCACGGGUAGUGCCGUGUGAGGCCAUUCACAAUGGGACUAGGUGGCAUUCAGCCUCAACCAAAAAGGCGAAUAUUCCUUUGCCUCGUCAUCAAACCGCGCGCGCUCCUCAACUUCGCGUAGCCAAAGUUGGCUUCACGUUCUUCGUCUCAGCGGGACCCACACCACCACUAGAGCAGAGAGGGGAGAGGGGGCAAGGCAACCGAACGCCACGGGAGGAGGGCGCCGAUUGACGCCCGCCACCGCGCAGCCGCCCGACGCCGUCGCCGCUCGUCGCCGUCCCCCGCUCCAAGUCGUACGCCCGCCGCCGACAUGCCGUUGCCGUCCCCCCCUCCAAGUCGUCCGCCGCCGCCAUCCAAUGUGUCUUUUGGUGAGAGGGGCGCCGCAUGGGGGAGAGGAGAGAGAGAGAAAACGAUGAUGACAACGCAGCCACCUUGGAGGAGGACCGGGCCGACACCGGAGAGGGGAGCUCGAGGUCGAUCCGCGCCGCCGCUUGGGCCACGUCACCGCCGCGUCGUUGGGGGUGGAGGAGAGGACGCCGGCGCUGCUCCGCUCGACCGCCGCCGCUCGAAUCCUCCGACCGGCGCCGUCGCCGUCGCCACCCCGCCACCGCUCCGCUUGGCGCCGGCGCCGUCGAGCUGCCGCUCGGCUCUCUGUGGUUGGAAAAGGAAGAGAGGGAGAGAGAGAGGAGAGGAGAGGGGAAAGUGAAAAGAGAAAAGUGGUAUUGGUGGGACCCACUAAGCUUCUUGUAUUGUGGUCUUGCGGAGUUUGCAUUAUAGAACAUCUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGGAAUACCAAAACUUCGUGGAACAUGUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGAAACAUAAAAACUUUCGUGACGCACUGUGAAUGCCCUGACAGGAUCGGGCGGAAGGCCAAGCCGGCAUGAUCGCGUGCGACACUGCGCGGCAAGGCCGGGCGCAGUGAAAGUCGGGGUCAUGCCGCCACGGCCACGAUGGAAGAUAGGCGGGGCUGGCGCUGCGGUGGGGAUUGGAGGUAAUACGGAGAGAGGGAAGAGAAAUGGCGGACUGAUAUAUGAAGCUAGGCCGCUAGGGGUGAUAUAUCGACUCCUCGCUUGGCUCGAACCACAGGUCUCGGCCGAAGGGGACAUCGCCGUUCACAGCCACCCUCCAGUC
Sequence
(OSA-LNCN7526.2):
GCCGUGAACAACACCAAUGUAGCCAUAGAAUUGUCAGAGCUGGCCGAAUAUAGGACUUACCCCUUCACCGGAGAAAGAAAGCCGAUGCAGCCCCGCAUCAGGUGCCAAGUUCCACUCGUUGAUAACUAAAACCCCGGAAAAGAGGGUGGCGAUGCGCCGAGAGUAGUUGCAUUGAUCGUUGAGAUAGAUUACAGAGACUCCGGGUGUACAUAUUUAUACAUAUGGGUAGAUACUAGUCCAUAUCGAACACGACACAUAUUUUCUAAAGAUAAAAGGAAAGAUAUAAGUCAUGAUCGGACACUAAAUAAACAUUUCCUAAAAACAUUUCCUAAAGAUAGAAGGAAAUGACUGAAUUCUGCCUAGUUAAUAUAUAGAAUUAAGCUACCAUGCCAUAGUUUCUUCUUGACCUCAGUCUCUUCUGGAUAAGUUUCCAUCGGCUGAUUGCGUUCUUUCCUUAACUGAAACCAUUAAAAAAUAUUAUUUCCCUCCGUUUCAGGUUACAAGACGUUUUGACUUUGAUGAAAGUCGAACUGUUUCAAGUUUAACUAAAUUUAUAGACAAAUAUAGUAAUAUUUAUAAUACUAAAUUAAUUUCAUCAAAUCAAUAAUUAAAUAUAUUUUUAUAAUAAAUUUGUCUUGGGUUGAAAAUAUUACUACUUUUUUCUAUAAACUUAGUUAAACUAAAGCUGCUAUUUAACUUUGACCAAAGUCAAAACAUUUUAUAACCUGAAAUAAAGGGAGGAUCAAUUUGACGUUAACAGUGCCACGAGUACAGCCAAACCGCGUGGUGACCGAUGCAAGCAUAAGUAGUAUCGCUCGACGGGCCCGGCUGGACACCGUGGCCGCGCUGGCAGACGCUGAUCCGGGGGGCUCCGUGCAACAGGUUCGCGCACAAGUUAGGCCGACGCAAGCACGGGUAGUGCCGUGUGAGGCCAUUCACAAUGGGACUAGGUGGCAUUCAGCCUCAACCAAAAAGGCGAAUAUUCCUUUGCCUCGUCAUCAAACCGCGCGCGCUCCUCAACUUCGCGUAGCCAAAGUUGGCUUCACGUUCUUCGUCUCAGCGGGACCCACACCACCACUAGAGCAGAGAGGGGAGAGGGGGCAAGGCAACCGAACGCCACGGGAGGAGGGCGCCGAUUGACGCCCGCCACCGCGCAGCCGCCCGACGCCGUCGCCGCUCGUCGCCGUCCCCCGCUCCAAGUCGUACGCCCGCCGCCGACAUGCCGUUGCCGUCCCCCCCUCCAAGUCGUCCGCCGCCGCCAUCCAAUGUGUCUUUUGGUGAGAGGGGCGCCGCAUGGGGGAGAGGAGAGAGAGAGAAAACGAUGAUGACAACGCAGCCACCUUGGAGGAGGACCGGGCCGACACCGGAGAGGGGAGCUCGAGGUCGAUCCGCGCCGCCGCUUGGGCCACGUCACCGCCGCGUCGUUGGGGGUGGAGGAGAGGACGCCGGCGCUGCUCCGCUCGACCGCCGCCGCUCGAAUCCUCCGACCGGCGCCGUCGCCGUCGCCACCCCGCCACCGCUCCGCUUGGCGCCGGCGCCGUCGAGCUGCCGCUCGGCUCUCUGUGGUUGGAAAAGGAAGAGAGGGAGAGAGAGAGGAGAGGAGAGGGGAAAGUGAAAAGAGAAAAGUGGUAUUGGUGGGACCCACUAAGCUUCUUGUAUUGUGGUCUUGCGGAGUUUGCAUUAUAGAACAUCUAGCUAGUAUUGUUCUUGGUCUAGGUGGCAUGUGAGAAACAUAAAAACUUUCGUGACGCACUGUGAAUGCCCUGACAGGAUCGGGCGGAAGGCCAAGCCGGCAUGAUCGCGUGCGACACUGCGCGGCAAGGCCGGGCGCAGUGAAAGUCGGGGUCAUGCCGCCACGGCCACGAUGGAAGAUAGGCGGGGCUGGCGCUGCGGUGGGGAUUGGAGGUAAUACGGAGAGAGGGAAGAGAAAUGGCGGACUGAUAUAUGAAGCUAGGCCGCUAGGGGUAUUUCUA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.95%
ME_num:
MEP:
52.24%
HE_num:
HEP:
0.61%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.86
Avg Expression:
4.24
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
Num. | Condition | log2(FoldChange) | Padj |
---|---|---|---|
1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.45065326782199 | 0.0456623947291389 |
2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.16533378989168 | 0.000377880777474216 |
3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.44984794328457 | 7.76906824079718e-05 |
4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.37564771734763 | 0.0336092845982654 |