Chr:
Chr9
Start:
5471701
End:
5491520
Strand:
-
Ref_name:
OSA-LNCN7523
Sequence
(OSA-LNCN7523.1):
CUGUAAUUAAAGGUGAUUGCGCGCGGCAAUCAGGUACGCAUUGAGACCGACAUGUAUGGGCGGGAAGUAGCACCCCUAUAUACACAUCUACUUGAACACUAUCAAACUAUAUUGCUUAGGUCCAUAAUGACACUUAAAUUAUAUCCUGGUUUGGUCUUGUAAUAAUCUUUUAGAUUUCUAAUAGUUUCUUCCCCAUGGAUUAUAAGGAUGGAUCGUAUUAUGGGAAUGAUAUUGCUAUUAGUUCAACUUAUAAUUGCCUGUUGUGGAUGUCUGUAUUUAUAGGGGAGACUCUGCCAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
40.24%
ME_num:
MEP:
43.5%
HE_num:
HEP:
16.06%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.78
Avg Expression:
5.02
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.04172882254561 | 0.0407406607213938 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 8.93565301855222 | 3.51360234275093e-13 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 8.30336286711665 | 1.41237326052341e-11 |
| 4 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -1.49492975354524 | 0.0311905993338027 |
| 5 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -3.32611540629872 | 1.92888842035833e-06 |
| 6 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -2.04950612251675 | 6.61935580954355e-06 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -1.59891451619949 | 0.0212539410730399 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.39279991744163 | 0.00635433655558434 |
| 9 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -1.30303518306673 | 0.00165919417056567 |
| 10 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -1.85244315144751 | 3.14760031873071e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 7.29608212577776 | 2.82426194183107e-09 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.61252390167363 | 0.00605739426130789 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.3252198836329 | 0.0480057370632876 |
| 14 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.07489159278359 | 0.00886201316461701 |
| 15 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 2.55763392102768 | 0.0159937084444837 |
| 16 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 2.50512472671624 | 1.59628827268452e-31 |
| 17 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | 2.39845515173964 | 0.00477105660637824 |
| 18 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.21025102311672 | 0.00593244606605823 |
| 19 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -4.75921967237167 | 1.17593549411606e-05 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 5.4001797339071 | 3.12971470659292e-05 |