Chr:
Chr9
Start:
4353017
End:
4354840
Strand:
+
Ref_name:
OSA-LNCN7506
Sequence
(OSA-LNCN7506.1):
CCCUAGAAUUAUUAUUUUCAAACAAGCAGCUGAUGAAAAACUAUAUAACUAGUGAUGGAAUAUUUGUAGGGAAAAAAAGGAAAUGCAACUCAUGCAUCCAAAAAAACAAAACGGAAAAAGAAGAUAACAAAUGUAGACAGAGGUCAAGAAAAAGCAUCUAGCAACACAACAGGGAGAGAAAAGCAAAUGUUGUUCUUUGGUGGUGACAUUGUGACUGCUGUGGGAAAGAAAUAUAUUUUUUUGAAACAAAGAUGUUGUUUCUUAGUGGACAUAUUGGGAUUCCAGCGCGCUUGCGCAACCAAACACAUCUUCCUGAGAUCACUAAUGGCAUCAUACUUAUCAGGAAAAGGACAGCUAGAGCAUAAGCAUAUAAAAGAAGUCCAAAUCGGCAAUUGAAACAUCUCCACCAGGAACAGUCCCAGGCCACACAAAGUCCAGGAACACAAGGUCCAUCCCUCAUCAGCAAGCGUCCAAAUUAAACAACAGCAACUUCUUCGGCCAUUAAUUAGCGGCCACCGAGAUCCACAUGGUGACAUGGUGUCUGAAUCACAAUUCACACCAACAAGAAGCCUUGCCGUGAAAGAUCACACAACAAAGCCAUCUCCCUCCCAUGUACUAAAUAGUUUGGCUUCCAACUGCUAACAAUACAUACAUCAUUCUGGUGGUACUUGACCUCACAAAGUCUUGGGAUCUAGAAACCAUAGCCAUUGGAACAAUCAACGAAUAUGGUUGGAAAAUUAAACUCUCCUAGCCGGCACAGAUGACUGAGUCAGACGAGAUGUAAUAAAGUAAUAAUACAGCUCUUGAGCUCCAAAUGACGAAGCUAGGAACAAACAGUACAUGGCACCGACACCAAGAAUUGCCCCAAAAUUGGCUGCUUGUACCAAAGCUGCAAUUAGGACCGCAAAAGCAAUCAAGAAUAGAGAGAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
3.86%
ME_num:
MEP:
32.11%
HE_num:
HEP:
63.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.68
Avg Expression:
26.94
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.08231067092708 | 1.91396225579809e-11 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.17922552128994 | 1.63028457342202e-11 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.76670242153301 | 1.1761141549882e-19 |
| 4 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | -1.02095808851629 | 0.000668295377976964 |
| 5 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | -1.12071578966793 | 0.000241385273459209 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.16030143046334 | 0.000232282789387357 |
| 7 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.93937698032936 | 4.93873141576602e-12 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.03187454413677 | 3.24734211296699e-16 |
| 9 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.06436896078567 | 0.00257889767799749 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 1.62414848698567 | 6.39783858770247e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.38214944254972 | 2.74796445127203e-16 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 1.23214625906434 | 0.00349412649035137 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 1.02709713337514 | 0.0139979194740419 |
| 14 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 1.81947472567679 | 1.43631078619723e-11 |
| 15 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.6183209358872 | 1.70433416565997e-20 |
| 16 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | -3.61495220303933 | 3.6405653374576e-09 |