Chr:
Chr9
Start:
4334432
End:
4335486
Strand:
.
Ref_name:
OSA-LNCN7503
Sequence
(OSA-LNCN7503.1):
CUAGAUCAUAUGCCGUGGUAAGCUUACCAACAUGAUGCAAUGGUGUUUUCCGAUGCCCAUGCUAACCGUACGGUGACGGUUGGUGUUUGGUAAUGCAAAUUAUUAAAAAAAUCAACAUAUAUGCAGUGGCAAUGUAUACUGAAAUACGUAUCAUUCUCGAAAUAUGUUUGACAAGUACUAUAUCAUUCCUCAUCACUUUCUCAUCCUAGACAACACCAAAGUAAAUUUAAAGUUCUCAAAUAAGUACAUAGUAAAACUGCUUCUUAUAAUGACAAAUUUUCUAGUUGAAGAGAAAAUAGGCGAGAAAAUCUUGCCCAUUGAACUCCCCGCUUAAUCUUGUUGUGAGGCAUCAUCUCGAGCGCCUGGUAGGCAGUGGUCUUUCCAUCUAUUCAAUGUCAUGGGUGGUCAGCGGAUCUAAGCGACUACGUCGGGGCUGCUUCAGGAAAGCAAGAUUAUAAAUUGAUGCGUAUUUCAUGGGGCCUUGAUUUUGCUUUCCCAGCAAAAAGAGUAAUGGACAGAUGGAAGGCAUGAGAUAUAUAUAAAAAGGCAAAAUUUAAACUGAGAAGCCUCUCGGUUUAGUGCUAACCAGCAACGAACCAAUUGUGAAAAGUACGGCUACACGUGCUAACGUGCAUGCUGUUAGCACUAUCCAGCUAGCACUCUCGGUGUAGUUGUGUCCAUUAGUGAAAGUACCUGUCGUCUCUGAUGGCGGAUAAUGUGCGAAAAUACGUUCACUUCUUUUCUAUAUAUCGUUGCUCAGAAUUCUUGCUAAUUAUUGAAAUACACAAUUGUUCAGAUAAUAUAUAUUUCCUGAUAUCGGUCAAAACACAUAUUCUUUACUUCUUUUCCCAAGUUGUGACUCCUCAUAGUACAAUAUCUAUAUACUUGAAGUUGCACGUUGUCCAGCUUUGCAUGAGUAAAUGCCAUCUUUGAAUGUCUGAGCAGUAAAUUUUUAUUGUGUGGAAUUGUUUUUUUUAUGGACACAACUACACCGAGAGUAUUAGCUGGAUAGUGCUAAAGAGAGACACCCUUCUUUCAAAAAAAAAGCUACUAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
60.77%
ME_num:
MEP:
25.41%
HE_num:
HEP:
13.62%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
panicle
Tau :
0.82
Avg Expression:
5.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.14426576728602 | 0.001975155496991 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 8.85430703070295 | 1.14389254753237e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.12533879956875 | 0.00127753669280159 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.22946568743773 | 0.000266516674021141 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.08448027185178 | 0.00586292682211171 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.19968299574119 | 0.00230411479372279 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.07795356816036 | 0.000778796765434933 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 6.87818742824892 | 7.85565704634554e-06 |
| 9 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | 1.77563663531088 | 0.0256502328650563 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.52333722140544 | 2.75532926421589e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.26241209071735 | 6.10668796912795e-05 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.09246286734008 | 0.0027945102072736 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.56593563152447 | 9.73792169498657e-07 |