RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7502

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

4331005

End:

4333604

Strand:

+

Ref_name:

OSA-LNCN7502

Sequence
(OSA-LNCN7502.1):

GCGAUAUCUACGGACUACUUGGAGGGAACAACGGCGGGAUCCAUCAGUUGGCGUCUACAGCGAGUCGGAGGCGAUGGUGCGAUACAUCGGCGCGGCAUCUUCUGCCGUGCCGUCAUCGCAGGAUCCCUACAAAAUGGCGUCAGGCGGCGGCACCACGGCAGGACAUGUUCCUCAGAGGCAACGAUGAUCGUGUCGAUCUGGAUGACGGCCAUAACCACUUUUCCCAUUGGAUACCAGCAGGAUCUACGGCAAGUCGAAGGCGACGCCGCGAUCCAUGGGCAUAGUGUUUUCUAGGAACCGGCAGCGGUGAUCCUUCGCAGACGUGGGUACUGCGAUAGAUCCCGUCGGCAAGCCUGUGUGCAGAUGCACCACCACCAAGCCUGACGUUUGAUCUCUUUCCAUUUUCUUUGCGCAUCUCUCACAGAUCUUCCUCUUGUUAGAUCAGUUUCUAUUGCUUACCGAUGAUGAUCAAUUCUACAUCAAUUUCUUUGUGCAUGCAGAUGCGAUGCCAGGACGCAUGCAUGGUGACUGACGGACGACGGCAGACCAGCGUCAGCUGAAGCACAUGGUGCAUAGGUAGCUGCCAAAAAUCAGAGGCGACUGUUGAGUUUGUUAUUACAGCUGUGGCCCCAACGUGUUCCUGGUGAUUGCAGUUGCAACGGUUGAAGGAAUAAAUCUGUGUUUGUUAGCAGAUGCGAAUGAUGCGGUGAUCGAGUCAGAAGAAGACCGCGUCGGUAGCAUUCGUGUGCGUGAGUUUAGCGUGGGUGCGUGAGUCGUCGAAUUCAGAGAAAAGCGGAUCGUGGGAUGGCACGAUUUGAGCCUCGGAUUCUUUCUUUUGUGUGCAGUAUAAGUAGGAGUUUUUGUACUGUUAUUCGAGUUGCAUGUUACUCUGUUCAGUGAAUGAAAACCACAGAAAUUUAGCCCCACA

Sequence
(OSA-LNCN7502.2):

GAUCCAUCAGUUGGCGUCUACAGCGAGUCGGAGGCGAUGGUGCGAUACAUCGGCGCGGCAUCUUCUGCCGUGCCGUCAUCGCAGGAUCCCUACAAAAUGGCGUCAGGCGGCGGCACCACGGCAGGACAUGUUCCUCAGAGGCAACGAUGAUCGUGUCGAUCUGGAUGACGGCCAUAACCACUUUUCCCAUUGGAUACCAGCAGAUGCGAUGCCAGGACGCAUGCAUGGUGACUGACGGACGACGGCAGACCAGCGUCAGCUGAAGCACAUGGUGCAUAGGUAGCUGCCAAAAAUCAGAGGCGACUGUUGAGUUUGUUAUUACAGCUGUGGCCCCAACGUGUUCCUGGUGAUUGCAGUUGCAACGGUUGAAGGAAUAAAUCUGUGUUUGUUAGCAGAUGCGAAUGAUGCGGUGAUCGAGUCAGAAGAAGACCGCGUCGGUAGCAUUCGUGUGCGUGAGUUUAGCGUGGGUGCGUGAGUCGUCGAAUUCAGAGAAAAGCGGAUCGUGGGAUGGCACGAUUUGAGCCUCGGAUUCUUUCUUUUGUGUGCAGUAUAAGUAGGAGUUUUUGUACUGUUAUUCGAGUUGCAUGUUACUCUGUUCAGUGAAUGAAAACCACAGAAAUUUAGCCCCACA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

484

LEP:

98.37%

ME_num:

7

MEP:

1.42%

HE_num:

0

HEP:

0.0%


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Type:

MCR ()

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

spikelet

Tau :

0.96

Avg Expression:

0.53

Tip: OSA-LNCN7502 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN-5.007917653383370.012333145247888
2Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN-4.166577977450350.0249135613631706
3Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN-4.308475494506220.02120708552783
4Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA-4.662503171050720.0248438705447594
5Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA-5.370649574999610.00555805385638968
6Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA-5.072125067340580.0081529647351265
7Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN-5.546186805369530.00460417272227349
8Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA-4.959603616012380.0141754684935981
9Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA-4.747121822799550.00775249468057033