Chr:
Chr9
Start:
3615333
End:
3615600
Strand:
.
Ref_name:
OSA-LNCN7494
Sequence
(OSA-LNCN7494.1):
UGGAUGCAUAGGGCUUUCAGUCAGCCAACCAGCGUUCGAACCCCCGUUCCAUCCCUUUUUCUUGCUAUUUUCAGUAGUACACAUGCACGUGCACAAGGCCUAGACUGUCCCAUCAAGGCCCAUCCUCUCUUGGCAUGACAAACCGGCCGGCUCGGCUCGCUCUGGUUCACCGGUUCACAUGAAAACUGGCGGUUCAGGCGGUUUAUUCCGGUUCAAAUGCAGGGGCGGUCUUUACAGCAAACCGAGCCGCCUAGCCCUCUGGUUCUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.96%
ME_num:
MEP:
13.62%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.90
Avg Expression:
1.78
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 3.63070863446569 | 0.0338362719911619 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 3.92602527251372 | 0.0115090036437632 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 3.53306332978165 | 0.0276594448298004 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 3.66427601476658 | 0.0188967853777992 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.93568431297806 | 0.00753061289487618 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 4.84750307592214 | 0.000679806119635112 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 4.35975374410568 | 0.00186527737081391 |