Chr:
Chr9
Start:
3546039
End:
3549074
Strand:
+
Ref_name:
OSA-LNCN7493
Sequence
(OSA-LNCN7493.1):
UUGAUAUACAGAACAGCUUUCGAUACGUAUACCCAAGUUUUUACAGAAAUUAUUAUAUAAAAGAUAACUAAGACAGGUUUUAGGGGCCGACAGGCCAAACACACUCCCUACAAACAAAAGACCCAAACACAAAAUAGGAUAAAAACACCACAGGCAACGCCUGAGAGCAGAUCGACCUAGAACAAGAACUCGUCAGCACCAUAGAAUUAUUCCCCUUCCUGCGCCUCCUCAGGGAAGAACUGAUCAUCUGAACCACAUUUUAUGCAAGAGGUGAGUACCGAGGUACCCAGCAAGCCACAUCCAUAAUAAUACAAAUAGAAUAUAUGCAAGGCGUACAAAGAAUAUAGUUCAUCAAGGAGGUUUCAUAACAAGCCUAUUAUAAAUAGUUUUUCCCUACUUUAUCAAAUAUUUUAUUCGCAAACAAUUGUAAAUCAUCAUUUUAAAACGGUAGCAAUAUUAAUCACCAUUCAUCCUCAUCUUCAUCAUAUUCCAUAUUUGAAUUUAAAAUCUACUCAUACCAUGAUAAAUAGGAAUCACCCAAUGACAUAGCUUCUUAACCGGAAGCACGACACAUUCGAAUGAUUUAAGACUCAUCUCUGCAGAGACUGCCCAGCUUUACCCACCUGAUGUCAACAACUAGCUAGGCUGAGGACAACAUAGUCGUUCGAGAGUCCCACUUACUACUAGUUACUGCUCAGUAGGAUAUUGAUCCGUCCUAGCAGUCGGGCACUUGCUGGGCCUAAGCAAGGCUAGACGGUCGCUGCUUUCACGGGUUCCACCGUUGUGGAUCAUGUCAACCUGGCCAAAGCCCCUUCCACAUGUCCACCCCAAACCUGCUCAUAGAGCCACCCUACAGUCUUUCAUAUAGUGAGACAAUGUACUAGGCUAAGUUUGAUUACUCAGUCCUGUGGAUGGGCGCAAAUUACAUCAUUUUCCAUGGCAUAGGGGUAGUCCUUAUAUCCGGGGAAAACCACCAAAACUAGCACAGGCCCGUGCAUACUUCAAGUGUAAAUAUACACUUUCCACAAAAUAAUUAUAACAACAUUGUCACGCCCAGAAAUUCACGAACCAGAAUUUCUAAGCUGAAUGUGCAUUAAAUCCCUAUCCAGGACCAGCCAGGGUACACAAACGACAAUUGUUGACCUACAGAUCCACGUUUUACAAAAAUAGAAAAGAUUACAAAAUGCAGCAAAAAAGAUAAAACGAGCUAGACUUGGAAACUUGACUUCAGUAGCGGGGCGACUCCACUCCACAGGCAAACCUUGACGGCAGCGACGAAACCAACUCCAACAGGACAGCUCCCACUAGGAAGAUCUUCAGCUCUGGUGUGGGGGAAAAGAAAGCAAGACUGAGUACUACCCACUGUACUCAGCAAGUCAUACCGGAAGAGGAGGUAUGAUGCAGGAUAUAACCAAAGGAGGCUAAAGGUUCUUGUGCAUAAAGCAGGCAUUUCAAAGCAGUAGUUGAAAGCAGUAAAACAGUAGUAGUAAUUAAGCAGUAUUAACCAAUUACUGUCUAACGCUACACCACGUUGCAACAGGCCCAACCAACCACCUGAACUACACCAGUUCAUUAAACUAAACUCGGGGUGAGACUAAUCACGGUGAAUCUGGUUGAUCGCCCAUAACCGCGGGCACGGCUAUUCGAAUAGUUUUACUCUGGCCAAAGGUGUACAACUGUACCCACAAGACACGAUUCCACACAUGUCGCCAUACCCCGAAGUAUCAUCAUGAUACUGCAAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
73.78%
ME_num:
MEP:
16.67%
HE_num:
HEP:
9.35%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
leaf
Tau :
0.84
Avg Expression:
3.18
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 7.65707132299795 | 1.83309903151302e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 6.95164533768054 | 9.24835243220813e-08 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 5.95498137007951 | 1.46835075743909e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 10.4879104871383 | 1.79828116050618e-17 |
| 5 | Vialone_Nano // leaf // control--/--Vialone_Nano // leaf // 100 mM NaCl | -5.39478319250764 | 0.0288244885369265 |
| 6 | Baldo // root // control--/--Baldo // root // 100 mM NaCl | -5.50401381072853 | 9.38462884173782e-12 |
| 7 | Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl | -8.41905242418191 | 2.10033855167248e-10 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 6.92696407011048 | 6.85504005576816e-08 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 7.33748044796356 | 7.99584048472003e-09 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.56781808652175 | 0.00910569779140538 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -5.46689753164163 | 0.00829390379721007 |
| 12 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -6.40313982679575 | 0.00101112156463642 |