Chr:
Chr9
Start:
2703582
End:
2704793
Strand:
+
Ref_name:
OSA-LNCN7479
Sequence
(OSA-LNCN7479.1):
GGGAUCAUAAGAAUUAGUUCGCUCAAGUGAACUACAAAAACGCUAGGAAUGUAAUGAAAAAACAAUGCAAAUUAUACAUGUUAUCAGCAACAGCAUCGAAUCUGUACACUAUGCUAGAGCUUAACAGACUCAACUACUCAGUCAACUGCAAUGCAGGAAUUCCCGCUGAAAAAAAACUGCAACGCAGGAAUAAUGAGAAUGGCAUGGUAGGCUGGAACCAGUACUUCAGUAAAUGGCAUGGUAGGCUGGAACCAGUACUUCAGUAACUUCUGACCAUAAUACUACUAGUAAUUUGUAGAAGAUUCAUGGGCCGGAAGAAAACAUGAUCUUGUCUUUCUUUGUAGAGUUCUGUUUGCAGACUAAAUGAAAAUGAUUCAGCAAGUGAAUGGGAAUUCUAGUAAAGCUUAGUGGAGGAAGCAAUUGGAACCAAAGACAGGUUGUUUUGUAUGCUUGAGAGCAUGUGAUAUACCACCAUAUAUCAGAAUCCAAUUGAAUAGACAUCAGCAUUUGAAAUGAGCAACAUGGUACAGUUCAUAAAUUUGCAUGCUAUAGAUAUGUAAUAAUAUUAUAAGUACGUCUCAUUAAUAGUGAACUACUGGAUGGAGGCUACGAUGACUAAAAAUCAAUAGGCAAACGUAUAUAGAUAAGUUAUUUGUAGGAUAUGUCUUCUGUGGACAGACUGGGAAAGGCUAAGAUGCAAGGCACAAAUACGCUGUACAAAACUUUUAGCGCAUCGGCAAAUGCAGGGAAUGCUUCAGCUUUCUACAUUAUCUAUAUGUAUUAUAGGAACUUACAUACAAUUCACAUGCUAGGUUAAAUUACAUUAGCAAAGUUCAACAAUACCAUAUGCAUUAAAUUUUUAAUGUUACACGAUUGACAUACUUUAACUAGAUUCUGAUGUGAGCAAUAAAAAAAAGAAUAAAAGAGAUUUGUAUUAGUCCCUGUGACUACAUUGAAGGAAAAGCAAUCAUGUUGAGUGCAAAACCAAAUAUAUUCUUGAUGAGUCCUUGUACAUUUUCUAAUUUAUUAUUUUUCACUCUCUCCUUCUCACUAAUCUCCUUCCUGGUUUCUUCAAUGCAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
11.38%
ME_num:
MEP:
74.59%
HE_num:
HEP:
13.82%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.66
Avg Expression:
7.84
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.28321856946317 | 1.20414136872024e-05 |
| 2 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 3.5h | -1.27209497183088 | 0.0206494902937257 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.15595853180117 | 2.42135898754742e-05 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 1.27397586370817 | 4.76834994815731e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 1.10192931948587 | 0.000311826034161269 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.58931086219188 | 1.13742555811202e-09 |
| 7 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -4.01655094888889 | 0.00214826462910549 |
| 8 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | -2.40043239047975 | 1.91567460061337e-05 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | -1.87763002332292 | 0.0467770708182568 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.65126017691127 | 9.01784569939902e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.52456432632077 | 1.40705870500027e-10 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.51469838481207 | 2.31176036066473e-07 |
| 13 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.86562935530524 | 0.0241111213975795 |