Chr:
Chr9
Start:
2219162
End:
2219900
Strand:
+
Ref_name:
OSA-LNCN7465
Sequence
(OSA-LNCN7465.1):
GAAACCCAGUCACAUUGAUAACAUCACUGCUCUAAAUAUAGCCCACUUGUUAAUUAUAGUCAAACCGUAACAAAAGAAAAAUAACAGCACAUGAAAAGAAGAGACAAACAUGUCAAAUAAAUAAGUGAAAUACAUGGCCGGUCCUUAAACUUCUGGGGUGGUGUCACUUAGGGACUGCUCAUGUAUUUCACUCAAUAAAGAUACACAUGCCAUUUAGACAUCGGAAAUUAAGCAACUGUGACACAUAAUUCAAACUUCCUAUUUGAAGAAACUAUCAACAAAACAAUUAAAAUUCCAAUUUCAUGCCAACAUACGAAUUGUAAUCAAUAUAUGUACAUUCUUUACAAUUAAAUCAUUAUAUAAGCUUCUGUUAAAUUAGUUGGGGUUUAGAUUCUGAAUCCCAAUGAUUCCUGAAAUGAAUUAAACAAAUAUGUAUUCAGUCUUUUUGACAAGAAAUAUUCAAAUUAAGAUUUUUAUUUAACUCUUAGACGAUGACAUAAAGAAAAAGUCCUAUCAAGAGAAAUUAAAUUCGAAAUGUAACAUUAUAAAAUUCAUAAUACAGCGUAACCUAAAACAAUGCCAUCUCUCUGUUUUUUUAUCGACUAAAUUGCGCAGAACAGAGUAAACAAUCCAUUCAAGUUCUUGGUAAAUUCAGUUCUAAAUUCCUGAAUUGAAAUUUGUAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
48.98%
ME_num:
MEP:
49.59%
HE_num:
HEP:
1.22%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.83
Avg Expression:
2.47
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.71760143568867 | 0.000343818894639208 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.25421826956723 | 2.29307763476553e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.34953330422155 | 0.0096894757261204 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.74901599412106 | 0.000499658671848045 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.60052317347323 | 0.000864820195882308 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.82573919840691 | 2.1120844649395e-05 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.06483394302278 | 0.0145455759308063 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.95405217955985 | 5.89786859856376e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.31769240690643 | 0.000704521997330137 |
| 10 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 4.23373822277388 | 0.0458535205107887 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.80158449091169 | 0.000134074729685835 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.20585731660087 | 2.43282956644042e-08 |