RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7462

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr9

Start:

2135333

End:

2137504

Strand:

-

Ref_name:

OSA-LNCN7462

Sequence
(OSA-LNCN7462.1):

AUGCGAACGACCAGAGGAAUAUCUGGAAGCUGGUAGCGGCUGCAAAGAAGGAAAAAACGAACGGCCGGAUCUAGUCAAGCAAACAAUCGAACAGUUCCUGGCAUAAUGCAACAGUGAACCAGUAAAACAGUAGCGUACAAUGUCGGACGGCUGUGGUUGCAACGGCAAAAACUAUAGAUUUUAUAUGAUUUUUAGGGAUAAUCAGGGGCGGAGGGCUCGGUAGGCCGAGGUGUGGCGUUUGCCAUACCUUGCUCUCCCGCCGGACCCCCCGCCCCUCCCCCCCGCGGCGAAUCCCAGCCUCCCAGGCGGCAUGACGGCGACAACUCCGGCAUGGCGAUGGCGGCAUCGCUGCCUGCAAAUGCAAGACGGAAGCCGCGUGCCUGCGUGCGUGCGAACAGGCCACUGGCCACCUAAUUAGGCCCAUUGGGCCUUUUUUUUUUUGUGUUAAAUGGGGCUUUUGAUUUGUUGACCAUGAAACCCUAACUCCAAAAUUUCCCAAUCCCCCCAAAUCCUCAAUCUGACUGAGGGCAAGCGACGGCCGACGGGGGCUAGCGGCGGCGCUGCGGUGGUCGGUGGGGGCACUGCUCGAGGAGGGGCGUGGAAGCCGGCAGGGUGAGGCCGCGCGGGGAGGCAGGCGGCGCCGCGGCGGCCAGGCAGCGGCGCGGCGAUGUGCCGGCGUGGGGAGGCAGGCGGCGGCCAGCCGGCCAGGCAGGCAGCUGCGUGGCGGCCGCGGGAGGCAGGCGGCUAGCUAGCAAUCAGGUAGAGCUGCCCGCAGGCAGGGGCAGCAGGGAGCAGGCAGAGUCAAUCUCAAUUACUCUUUAUCUUAUUAAUCUCAAUUCUCAAUUAUAUAGUAUACUAAUCAAUCUUUUCCAUUUGUUUUGCAGUUUCUACAUCACUACAUGUCUAUCUAUCCACACUAGUUCUUUCAUGUGAUGUAUUGUUGACAGCUAAAAUCUUGAGGGUUUGCGAAUUUACCCCUGCUUUCUUGAAACGAAGUUACAGUUUGCCCCUACUAUGGAUGGCAUUAGGUGGGUCCCACAAUAUAUUGAAUUAAAGAAACAUAAAUGAGAAGGGAAAAAUAAUCUACAAGACAUUCACUGGUGGAGAAACCAUCUUUGGUCGGUCGACCAGAUUUCACAAUAGUCCCAGUUGUAUAAAAAAUUGGGACUAAAAACAUCUUUAGUCCCGGUUUAAAAGCUCCAGGGUACUUUUUAAUCUUUAGUACCGGUUGGUGUUACCAACCGGGACUAACGAUCUAUUUGUAGUCCCGGUUGAUAACACCAACCGGGAAAAAAGAUCGUCAUACGCUUUACUCCCGGACUAAAGAUCUAUUUAUAGUCCCAACCGGGAAAAAAUAUCGACGCUGAGAUCGGUGAGGCGUGCGCGAUCGGAUCGAGGUAUCUCCUCCUCUCCUUUAACUCGUCUCUCCUCCUCUCCUCAACCUUAUCUCCUCUCCUUUUAACUUCUCUCCUCAACCUUAUCUAUUCCUCUCCUCUCCUCUCUAACAGGCCGGCGCGGCGGCGGCGGCCGGUGCGAGGGCGGCGAGGCGUGAAGGCCAGGCCGGCGCGAGGGCGGCCAGGCGCGGAGAGGCGGCGGCCGGCGCGAGGGCGGCGGGGCGCGGAGGGCCGGCCGGCUGGUGCGGCGAGCCGGUGGUUUUUUUCUUUUUUUUUUUUUUGGAGAAUUUGAGAUUGUUGUGUGAUGUAUUUGAUUGGAUCUGAGAUUGUUGUGUGAUGUAUUUGAUUUGUGUGUGAUGUGAAUAUGUAAUUUUGUAGAAGUUGUGAUGUAAUUUUUUUUUUAAGAUUUUGUGAUGUAUUUGAGUAUUUGAGAUGAUCGAUUGUGGAUUUGGAGGUAAUUUGAGGAUGAUUGAUUUGGGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

35

LEP:

7.11%

ME_num:

453

MEP:

92.07%

HE_num:

3

HEP:

0.61%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

caryopsis

Tau :

0.59

Avg Expression:

3.18

Tip: OSA-LNCN7462 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.085854308148290.00233594765317431
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"-1.584755512786470.0137965532829856
3Vialone_Nano // root // control--/--Vialone_Nano // root // 100 mM NaCl1.676900731697310.0408193000432468