Chr:
Chr9
Start:
2032510
End:
2036330
Strand:
-
Ref_name:
OSA-LNCN7461
Sequence
(OSA-LNCN7461.1):
CAAACUUGGAGGGGGGGAGCGAGCUAGGCCGGUCUGAGAGAAAGAAGCAUGUGGGCCGCGAGAGAGAGAAGGAAGGCUUGGGCCAAAAAUGGCCCAAGGAAGGAAGAGAAACAAGAUCGCGCCGCCGCCGGGUGUCGAACACCUGGUGAGCGGGGGCUGCGCCGCCGCCACAGGGCUUCUCGGCCGAUGUGGGUGGCGGGGUGUGGAGAGAAGUUGCUGUUGCUGUUGUUGGAAGGAGCCGGGAGCUGCUGAAUGAGGAAGACCAGGCGUCGAACACCUACGAGCGUCGCCAACCGCUAGCCGCCCCUGUUUCGGCCGCACCACGCCGCGCGCCGUCGAACUCCGCCGUCUCGCCAUCCCGUGAUUCCGAAGGAGUUGCUGAGUUAAUCAAAGAUCCGGGUCAGCAAAUCUGUGAGCAAGAAGCUGGUGAUGAUGUCUCGGAUGACCCAUAUGCUUACGACCACGAGGGUGAAGAAGAUGGCGGCGCUUAGUAGGUCUUAGUUACGGUCGUUGCCUGUGGCAAUGGCGUCGCCGCUACCUUGAUUCUGCUGCUUAUCUAUUUCUGCUUUUGGUAUGUAUUCCGGACCGUUUGGUCCUAUGUUCUAAGACUGCGUGCGGGCUUAUGAUGUAAUAAUUCACGCUAGACAAUCGCAAUUAAUAUUCCAGCAAUGUAAUCGUGAGUACCAUACUACUUGAUCCAGGGAAAUGGUACUAUUAACACGAGAGAUUCCUGUUAUAAAAACGGGGGUCUACAUGGCGUGACCCAGCUGUCUCGGACAGAAGCCUAGGUACCCGAGGUAAUGCAGGUUUCUCGAAGAUUGUGUUAGGGAACCAACCGGCAACAAGACAACUGAUAACACAAGACAAGGAGUAGAUUUGUAAUAAUGUGAGCCCCUCCAUGGACUAUAAAAAGAAGGGGACAAGCUACGGAUGAAGGGUUGGACUCUUUAGAUCAGUAUACUUCGCUUUGUAGCCUGAAAAGGCCUUCGUUGUACUCAGCUGAUAUAGGAAAGACAAUGAAACCAACACAGGAGUAGGGUAUUACACCUCCGGAUGGCCUGAACCUGUAUAAUUCCUGUGUCUUUUGCUUGGCGGGGAGCUCGGGCUCCACAGAUCCGCUCUUGCUUUGAUCUCUUUCUACGCCGUACACCACAAACC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
63.82%
ME_num:
MEP:
34.15%
HE_num:
HEP:
1.83%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.90
Avg Expression:
2.90
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 1.02319566056986 | 0.0396660723001613 |
| 2 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 1.65598746475214 | 0.000636240279547088 |
| 3 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -2.7563622941059 | 9.96478813722251e-05 |
| 4 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.96868003781639 | 2.49562442149698e-06 |