Chr:
Chr9
Start:
844553
End:
846051
Strand:
-
Ref_name:
OSA-LNCN7452
Sequence
(OSA-LNCN7452.1):
GAACAAUGAAUCUGAGAAGAAGUCGGUGGCCUUUUGUCCUUUUUCCUGCGCGACGGUACAAGAGUGACAUCUGCUAUAAAUCCAAAAACCUCAACCUAUGAUGGGCACGAUGUCCCAGAUCGGCAUCGGCCUUGGGAAGGACAAUGAUCUGCCAACUGGGCAAUGGCAGAUCACUUGUGUUCUGGGAAGACAGAUGGCUGGCUGCAUGCAAGGAAGAUGCGCCAAAGAGCUGGCGCCGGUGGUCACGAUCAAGAACGGUUGCCGAAGCGCUAUGCAUUCUCCAGCCUGCCAAUGGAAUUGAUCAUGGAUAUACUCCAGGGCAUUAGGUAUUAAGUUACAUGCACUGAUCAGUUCAACCUAAAAGUUUCGUGGAAUAGAAGUGGGCUGUAAUUUUUAUUUAAUUGCGCGCCUGUCAGGAUUCGAACUCGAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.53%
ME_num:
MEP:
3.25%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.98
Avg Expression:
1.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -5.62863619435686 | 0.000648224915281393 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -5.72229334089875 | 0.000369537062409325 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -5.87537089657116 | 0.000260076130112697 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -4.90557058189427 | 0.00798370711664056 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -5.13771665414473 | 0.00242835948361283 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -5.30304493868589 | 0.00166568426366949 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -5.01101332671756 | 0.00151607113933306 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -5.68713105607949 | 0.000337640608896619 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.27934850463012 | 0.00263444609612041 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -5.58825840212093 | 0.00072714063620578 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -6.29305192571675 | 5.1448214469809e-05 |