Chr:
Chr9
Start:
299316
End:
300015
Strand:
.
Ref_name:
OSA-LNCN7440
Sequence
(OSA-LNCN7440.1):
CUAAAACAGCAUAGGCCCAUAUAUCACUGGGGGAGGAGCUUAUACGGUCUAAAAACCUAUAGCAAAGCGGUCCCAACCCUAUCCUGUCACUCUCACUUCACUCUCUCUCUCUCUCACUUCACUCUCUCCUGUACCACUCGGCUACUCCGCUCCCCCCAUCCGGCGCAAGGCGCAAGCUCACGCCGCCGCCGAGCGCAAGCUCCCACGGCCGCCGCCGCCGCCGCCGCCGCGCGUGAGCUCACGCCGCUGCCCCACGCUAGCCGCCGCUCGUAGCCCUUCAGCCAUGGCCGGGCACGACGACGACAUGUUUGAUUUUUUCUCCCAGUCACAAGCACAUCACGAAGCCACCUCCGUUGACGCCGCCAAGUACGGAUUCAGCCAAGCUUCCUCAGGCCGUGGCGGAUCUGGUGCGGGAAUUUGCAUUUUUCAUGUAACUGAUAUGUAUGCGGGAAUUUGCAUUUUCAUGUACUGUACAUUUCAUUAUGUAUGCUAUAUGUCUGCAUAUGGUGGUGCUGUCAAACUGUGCUUGAUGGCCUGAAACUGUGUUGAAUUUUAACUCUGUAUUGUGAACAAAUUUUCUUGUACUUUGUAUUCUCUACUGUAAAUCUGUUUAGAAUACACAAUUUGUCGCGAGAUGGUCUUGGUUGAUCUGUGGCUGCAUGAGGGGGUGUUUUGUGCAAUGCAUGUUCAUUAAAAAAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
59.35%
ME_num:
MEP:
35.98%
HE_num:
HEP:
4.47%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot_apical_meristem
Tau :
0.83
Avg Expression:
4.65
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.40368423167218 | 0.0318415195769113 |
| 2 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | -6.49064680001966 | 2.09745835216246e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | 2.39931205215314 | 0.0238265491674141 |
| 4 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 5.85092474815255 | 7.90313174658649e-14 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.30575837494463 | 0.0212927362371681 |