Chr:
Chr8
Start:
28337510
End:
28340957
Strand:
-
Ref_name:
OSA-LNCN7429
Sequence
(OSA-LNCN7429.1):
GGCUCCGGGGCGGCAAGGUGAGCAGCCUCGCCCUCCCGUCGAGCACGCCUACGCCCUUUUUAGUCUAGGGCCUCCUGCUCGCAACAUCGUGACAACGGUCGCAGUUGAGAUGCUAAAGGAAAAAUAGUUGUGGUCCAUACAACAGGCCUGCUCUGUUUUAGCCAGGUAAGAGAUUGGUCGCUUGCCGUUUCUGAAUUUUUUUUUUCAUAGGGGCUUGUGCCUACAGCUUCUUACAAAUUCAUGUUUGUAUUUAACACGUCUCCUAGUCUCUGGGAUAAAACAAGGUAAGAACCUUGCUUCCAUUUUAUCCAUCUAUUAUUCAUGCUGAUCAUACUUGCUAGAAUGGAAGCAAGGUUUAACCUUUCUAACCAUGCUCUCAUAGGAUGCUUGAUGGAGUUAUUGCAGAAAAAGGUGUGAAGCUAACAUUAUCAUCAUGUAACUUCAAUAUCUUACCUUGUUGAGGUUCACUCAAAGCAUUUGGAUGGAAAUAUUGAAGAGGCAAAUUUACCUUUACGUCUAUUCUCGUGCACAAUCCGUUCUUUUCUUACUACCUAUUUUUGCCAGCUUGCAGAGGAUCUAGUUGAUGUUAUUGCUCUGCUGUGUGAUAGGUAAACUUUUAUCCUUUGUAUAGCUGUGUUGCCAGAAUUUUUCUUUCCAAAAUUUUCCAUUCAUGACAAGCUUAAGCCCUUACUAGUACCAUUCUGUAUGACUGUACCUGUUUCGCCCUUUGGCCUUUGCAGUACGGCUUCCAUUAUUUUAAAUAUGAAUAACUCUUGUUAUAGUGGAUAGUCAUAUUUUUGAAAGAACCAUUUGGUCUCUGGCUCCGUUGUUCCCUCUUCUCCUUGUCUCUUCCUUAUACCUUACAAAGUCUGGAACAAUACUGCAACAUAAUCUUGCUGACAGGCUGGUAUAGUUGUGUUGCAUCCAUUAUCCAUAUAUUACCCUGGCAUCUUCUAAGUCCAUAAUUAGAGUCUGAAAAGGAUCAAACCUGAAUGGACUAUGAUAUGUCCCUUUUGUUCCAGUCAUUUCCUUUCUCAUUUGCCAUUCUAAUGGU
Sequence
(OSA-LNCN7429.2):
GCUUGAAUUGGUUAUACAUUUCAUUUUGACAUACAAAGUUCACGAGAGUAUUCUGUUCUGCAUGGCUUGACAUUCUUUUGGAUUCAGCCCAUUAAAAGGAAAGAGAAUAAAAGGAAAUACUAAGAUGGUUAUAGCUGAUAACGGUAGAACGAAAUAGGACUUUUCUGCUUUUCUUAUUAUAGGACUGUUUUGCUUUUCUUAUUAUAGAGAAAUAUCGAGGUCAAAAGUUUCAGAUAAUCCCCCCAGUGUUAUCCAAAUAUUCAACUGCAGUAGGAAGUUUGGAGCUGACCUACAGUUUGAUUUUUUCCUGAUUACAAGAUGGAUAAAUGGUGUAGUUCAUGAAAUGAGUAUUAAAUACUACUACUACAUUUCUUCGGGAAUAGAUGAAUGUUUUGGCAUGCAUCUCUUAAUUACUACUACCUCCGUCCCAAAAUAUAGUAGCAAUAUUUUGGCUAUGUAUCCGGACAUACCCUUGUCCAAAUACAUAGCUGGUAGUUAUAUUUUGGGAUGGAGGUAGUACAAAGUUUACAAUUUUCCCCAUAAGUACUGUAAUUAAUGUUCAGUCUUUCCAAUGCCAACAAACCGAGGGCACAGGGCGUCUUCUAUGCAUGCUGUGCAUUUCUUGGAAAUGCACAUGCAAUUACAAUAGCUAACAAUAACAGAGUAAUGCAUUGCUUAAACGGGGGUACUUUAUGAAAAUUUUACCUAGAAAACGUAAGACAUAAACUAUUGGAGAACAAAACCAAUACUCCGAAACAUCAUCUAAUAAAGAACGGAGGUAGUAUUUAUUGAGUUAAUUAACAUGUGACGUAGCCCAAUGGAGACAUGAAUAGUUUUAUGUGGGGACACACGUAAAUGUGACGGUGGCAGCGUGCAGCAUGCGCGGGAAGGUUUUUAUGGCUUGCAAUCAAAUUAGGGUUUCAGUUAGUUAAAGAUAAGAGUUGUUAGUAGUUAAUGUUUCCCUUCAAUUAGCAGAUUAGUUCAAUUUGUAAGCCUAUAUAUGGGCAGUUCGUUCAAUCAAUAAAGCAGUAUUAUCCCUAACCCUAGUUCAUCUCCACCAUCAGGGCUCCGGGGCGGCAAGGUGAGCAGCCUCGCCCUCCCGUCGAGCACGCCUACGCCCUUUUUAGUCUAGGGCCUCCUGCUCGCAACAUCGUGACAACGGUCGCAGUUGAGAUGCUAAAGGAAAAAUAGUUGGUACUGUGGUUUGUGUACAAAGGCACCCAACAACAACCAAAUACCACUUCAUUGCUUUUCCUUGCAAAAGAACUAUUUAAUGGUCUUGAGAAAAUUAUUGUUUUGUUUCCUCUGCAGUGGUCCAUACAACAGGCCUGCUCUGUUUUAGCCAGGUAAGAGAUUGGUCGCUUGCCGUUUCUGAAUUUUUUUUUUCAUAGGGGCUUGUGCCUACAGCUUCUUACAAAUUCAUGUUUGUAUUUAACACGUCUCCUAGUCUCUGGGAUAAAACAAGGUUUAACCUUUCUAACCAUGCUCUCAUAGGAUGCU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
31.3%
ME_num:
MEP:
63.62%
HE_num:
HEP:
4.88%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.81
Avg Expression:
5.74
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.39764603807699 | 8.25030723224903e-26 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.27097523336141 | 1.73963398037481e-10 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.03112016612904 | 4.83238749029282e-39 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.34764191019583 | 3.18471603358258e-16 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.24931354480375 | 2.93384019228365e-28 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -3.83801635226838 | 3.63761193042946e-31 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.34486955586705 | 1.34602966949394e-11 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.14795067657961 | 6.07087875202017e-27 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.49323359496494 | 1.81746765868712e-12 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.99160249324871 | 8.49880814946981e-44 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.87161742882412 | 4.96725215323697e-38 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 3.07802974971713 | 0.000669509577078185 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.26759450370005 | 9.45182553230192e-23 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.2380002809011 | 0.0240503317137454 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.65474408955033 | 3.4856189582509e-39 |