Chr:
Chr8
Start:
28170003
End:
28181982
Strand:
-
Ref_name:
OSA-LNCN7427
Sequence
(OSA-LNCN7427.1):
GCUCGCAGGCAUGGUCGCACUCGCACGGAGAGAAGUCCCGAUCCCCUUCGCAUUUUUCUAGAUUCGCCGAUCCCCUUUCCUCUAUUUUCACUAGUUCGCCGGUCUAGCCCGCCUCUUUGCCAUCGCUAUUGCAGCGCCGUCGUCAGUUUGUGACUGGAGCCAUGGCGGCCUUGGCUCCCCGCGGCGGCGCCCUCUCCUGCUCCACCUCCACCCCCAGUGACUCACAGCGGCGUCGCCCUCAUUUUCUCUGCUCUUGCUGACCAGGAGCGAUGAUGCCGUCGCGAGACGCAAGCUACCUGCACGGCAUUAACUCGAUCUGAUUUUGAAGCAUCAACAUGUAGUACUUAUCUAUUGCUUUAGUGUGUGCGCCACUCGUAUUCACUGGUGCAUCAAGUUUCUGUUUCUAUUGUACAUCUACAUUGGAUUUUGAAGUUCUUCACCCUUGCUUCCUUUCAUUGGUGUGAACUGUAUUUGUAAACUCUGUAUCAUCUGUUCCUGCUCAAUUGUUCUAUGUAUAUUGGUGUUUGUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
0
LEP:
0.0%
ME_num:
MEP:
0.2%
HE_num:
HEP:
99.59%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
seedling
Tau :
0.44
Avg Expression:
128.66
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 2.77680284525348 | 9.04836002600433e-19 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 2.93273545444704 | 1.74463106839857e-24 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.1770940262374 | 2.21413843035264e-14 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.98742465761362 | 5.55050681043501e-44 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 2.96334236464667 | 6.85686413994207e-34 |
| 6 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.86425366036146 | 7.49806585369287e-08 |
| 7 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.32814487579298 | 0.000485992286317698 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.14737058414074 | 0.000120399115665139 |