Chr:
Chr8
Start:
28003651
End:
28011201
Strand:
+
Ref_name:
OSA-LNCN7420
Sequence
(OSA-LNCN7420.1):
AAGAAAUUCAAGAAAACCAGAAAAAAGGGUAUGGGUAGGAGUGUUAUUAGCUGAUGAUAUAUAACAUUACAGCACACCGACACACUCCGUCGAUGAUCUCAGAUCUCUCAUGGCCGGCUUCAGUAGAGUCAGUCGGCCGGGCAGCCGGCAGCCGUAAAAGAAAGCAGCAGCAGCAGAUCCAUCGAGGGUAGCAUGCAUGCACUGCUUGCCGGCCGGCCGGAACUGACUUUGAACGGAAUACAUGAUGAAUAUAUG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
0.61%
ME_num:
MEP:
42.07%
HE_num:
HEP:
57.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.64
Avg Expression:
27.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.06743268586191 | 0.00165032581179478 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.05498250003176 | 0.000175159514908544 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 1.11514677056311 | 0.0111543881594484 |
| 4 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 1.82560835631057 | 0.0233236111149854 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.14926729661416 | 0.000307887528879806 |
| 6 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 1.56756024313211 | 0.0287477805033984 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 1.23125809678372 | 3.2481499393726e-06 |