Chr:
Chr8
Start:
27605221
End:
27605858
Strand:
+
Ref_name:
OSA-LNCN7412
Sequence
(OSA-LNCN7412.1):
CUGUGUCUCUGUCUGAUGCUCUCAGCUACACACAAGCACAAGUGCAGAAAUAGAGAGAGAGAGAGCAGCUCAUGACAUGAGGGCCGAGUUUAGUUCCAAACUAUUCCUUUAAACUUCCAACUUUUCCAUUACAUCAAAACUUUACUACACACACAAACUUUCAACUUUUCCAUCACAUCGUUCCAAUUUCAACCAAACUUCCAAUUUUAGCGUAAACUAAACACACCCGAGAAAUGGAGAGAGAGCCCCUCAUGACAUGAGGCGAGUGAAAGCGAAUUCAGAAACUUCUCCUAUGAUGCCCGGGCGACGGGUGCAGCGGGACGUGUAGGGAGGAGUCAAUUUCUGCUAGCUGCAGCGAGCAAUUGUUUCAACGGAACAUUGAUUAGGCGAUUACCACCAACAGGGGAGGUGUGCCACAGGUUUUUCUACGGCGAUUGCGAGCUGCGUCUCGAUCGCAAUUUGUC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.5%
ME_num:
MEP:
5.89%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.93
Avg Expression:
1.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 3.55732549740735 | 0.0158524892762289 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 3.75081766598177 | 0.0068965846833636 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 4.18850990999903 | 0.000903069283918744 |