RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7411

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

27552093

End:

27568658

Strand:

-

Ref_name:

OSA-LNCN7411

Sequence
(OSA-LNCN7411.1):

UCUUAACCCACACCCACACACAAAAAUAAAAAAUAAUACUAAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCUCCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.2):

ACACACAAAAAUAAAAAAUAAUACUAAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCCCGGCGCCGGAAGCUACCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.3):

CACAAAAAUAAAAAAUAAUACUAAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCCCGGCGCCGGAAGCCUCCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.4):

ACAAAAAUAAAAAAUAAUACUAAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCCCGGCGCCGGAAGCUACCGCCUCCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.5):

AUAAUACUAAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCCCGGCGCCGGAAGCUACCUCCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.6):

AAUAAACCAACCAAAAAAAAUCGAGGAAGAAAUUAGAGAGAGAGAGAGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Sequence
(OSA-LNCN7411.7):

AGAGAGCACACGAAAUUAACCGGCGGCCAACCCAUCCACGCCCCGCCGCCUCGAUCCAAUCAGCCAUGGAGGGAUCCCUAGCCCGGCGCCGGAAGCUGCCUCCGCCUCGUCGCCGCGCUCCGUGAGCAACGCGCCGCGGCGUGGGGGUGGCCUGGGCGAGGCGGACGACGAGGACGACGAGCAGGAGGUGGGCGGGAGGCCGCGGAGGAACCGGAGGCUCCGCCCGAUCGCCGAGAUCUACGCCGCCACGGCGCCGAUCGGCGGCGGAAGGAAGGCCAAGGCCAAGGCCGCCGGCGUAGAGUAGUAGUAGCCGGCCGGGGAGGGACUUGUUUGUAAAUAUAAGUUAUUUGCAGGGACUAGCUUGUUGAGUAAGUAAUAUUUAAGGGCGUGAUUAGAUUAAUUGCUAGCGUAGCUUAGUUGUAAAUUAUGUUACUACUACUAGAGGUUUUGAGUUUAAUCAAUCAAUCGUCCUACUAUAAAUAUUAUCAUGUUUGUUUUCUUUACAAGAGGAAUGAAAAACCUAUAUAUAAUAACUUUUUUGUUCAUCAUCGAUCUUAUCC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

0

LEP:

0.0%

ME_num:

117

MEP:

23.78%

HE_num:

374

HEP:

76.02%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.83

Avg Expression:

103.20

Tip: OSA-LNCN7411 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.615776173560041.35470517321559e-07
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min"1.480539547868090.012710209291121
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-1.421866981779761.65570118679331e-05
4Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min"1.405121219953720.04644431160991
5Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day-1.0767154394570.00156202208851221