Chr:
Chr8
Start:
27454937
End:
27457905
Strand:
-
Ref_name:
OSA-LNCN7406
Sequence
(OSA-LNCN7406.1):
CUUCAAGAGAGAUCUAGCUAAGCUGCAGUGGUCAAAUGAUGAGAUCACUCUUGCAGUAGUUAGCAUUUAACAUAUCAAGUUUAUAAUCACCUAUUAAAUGUAAUUAUUCAACCAAAAUUUCAUUAAUUUGGGAUACUGUAGCAAUGCGCAUAGUAUGAAAUUAACGGUUCAUUCAAAUUAGUUCUUUUUCUUCUUCUUCCUCUUCUUCUUUUGCUGGGAAUGAUCCUUUCAAAUCCAGUUCAUAUUCCAAGAAAUACUACAAUUAUAGUAGUAAGAGAUAAGCUUGAUUUUCCCAUGCAUGUCCUUAAUUUAUUGACAAUGUUCUUAUUCUUGUUAUUUUUAAAGUAAAAUGAAUUUGGCCAUGAAAUUUAUCUUACAGAUAGGUUUAUUAGUAAUUCGCCUACACUUUUUUGUUGUGCUGUUACAGUGUUCAAACUGAGAGUUGUACCACAGGAUUUGAAACGGCUAAGUCCAUAAGCCAAAUCUAUCGUUGAUCCUAUCAUGUCUCGGAACAUUCUCUCCAGCAGGAGUAUGUAGUUUUUCUAGAGAUAUUUAGACCUGCGAAUGAGUUUAAUGUUUUGGUGAUCAUUCUGCUGCACAUGACUUUGUGUACUGCCUGAUCCCCAUGCAUAUGGAAUUUCUUUGUAAUGGGAUCAUCUGGGUUUCCAAAGUUCUACUGCUAGUGUUUGUACAAUUUCUUCUAUUUUUGUAGUAGGUGCAGAGCUUUAUUUGGUAUUCUAAUUGAUGCAUGUACUGCAUGCCUUUUGGAAGCUGGCAUUUGAGUUUUAUGAAUGGUCUUCUCUGCCCUUUGUAUUUUACUUUUUUUUUCUUUCUGGAAUUUCCAUAUUUAUGGAGAUCGCUACGUGUAUUUCAGAUUAAUACUGCGGUGCACACAUUUGGUGAUUAUUCUUCCCUGAUCUUCUGGGCAUUAUAUAACUCUAAUUUCAAACUCUUUUGAAAUUUGAUCUUAUAUAUAUGCAUGCCAUCUGCGUUUAGUUCGAUAUUUUUUUAUUCCCAAGUAUUAAUUUUUUCCCUAAUAUAUAUAUGUCUGGUCAUUGCUGCUUUCGAAAUCACACUUUAAUGAUCAUUACAAUAUUAAAUUUUGUGGGAAUACUGUAGCUCAGUUUUGUUGAUUUCGGCAUAAACUGAUCAUUGCACCGUUAAGUUUAUUUAAUCUCAAAUUCCUGUCAGUCACUCAAUUAAGGCCAUCAAUUUUUUUGAGUAUUAUUUGUGGCAUGCACUAUAUAAUCAACUCAAAUGAUACUUUCGGAUAAAAUGCAUAUGGUGCAGUAAUGUUGUGCUGAAUCGGUUGGUCGAUUCUGUUCGCCGAUAGUUCAUUUUAAAUAUUCGGAUAAUCCUGUAGGAAUGGCAGCAAGAUUUCGAGGACAAGACAUAUGACCUAAGGAAGAUCUAGCAUAUCAUGGGGUACAGUACAAUAAGACCUUUGGCUACAGUUGUGUCGACAACUUUAAACAAUCUUGGAAAGUAACCAAGUGACAUCUGAAAAUCACUUAAAAACCUUAUCAGAAUCCGAGAUGCCAAUCCAUCAGUAAACUUAAGUUAAUCACUGACGAUAGAUAGAUUCAUCUAGGAUUAAUUACUAACCCAUGCAUGUUUAUGUAUUUCUCACGCAACUGCAAGGGAAUUAGGGAUAGAUAUGGAUGGAUGGCUUCAAUUCAGUCUCUUCUCUUUGGCAUGUGUUCCUUUCAAUGAAAAGGCAUGGGAGUAGGAAUAAUUUGUACGUGACUUUGUUUGGACCUUUCUGAGAAGUGCGAUGCAUACGCUUCCGAUUCGGUGCAUGCGCAUACACAAAGUCAAUGCUAUUGCAUUUGUAUAUAAUAUCUGCGUUUUUUUCGAAGAUUAAUUAUAUUUGUGUUUUUUUUCCCUAUCAUCAAACCUAGCUUUGGACAGUGACAGAUAUAUAUUUACAAGUGUGCUUCCCUAAUCCCCACCAUCCUCCUCCCAAUCUGCCUCCUUUUCUGCUGGAGACACCACCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
67.68%
ME_num:
MEP:
31.71%
HE_num:
HEP:
0.41%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.80
Avg Expression:
2.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.03558113590882 | 1.06083096788262e-05 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.649721303234 | 0.00846810618419921 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.17711691402391 | 0.000247243025299039 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.29065003473357 | 0.00871318627164952 |
| 5 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 1.93733214588947 | 0.0272388473167646 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -3.59225721941022 | 1.04802730799598e-08 |