Chr:
Chr8
Start:
27309998
End:
27311025
Strand:
-
Ref_name:
OSA-LNCN7402
Sequence
(OSA-LNCN7402.1):
CGCUCAAAUCGGCAUGCUCGUUGCCAAACCCCUUGUUCAUCGCGCUACACUAGUGAGCCCUCCCAUUCCUCCUCCCCAUCUCCAGUGGCUUAUGUAACCGCCGCUCUCGUCUCCUAACCUCUCCCGUUCCCUCGCCUCCGUCCACCUCUCGUAUCCAUCACCCAUACCAAUUUGGUCACUGCUAUGGGUCAUGACCCAAUUACCCAAUCCCAAUCUCAAACGCCAAUUAAUUCAUUCAUAGGUUCUCAACGUCAACGAGGAUCACUCUAUAGUUAAAAGGAGAAGGGUCCGAGUGAGUUUUGAUGCGGAUACAAUGAUCCAGUUUUCAUUUUUUUUAAAAAAAUAUACAUCAAAAUUUCUUAGCAUUUUCAUUUUUUUUAAAAAAAGGGUCAAUGAGCAGCCGAGCUGAAGCAAGAAAGGCAGGUCAAACACAAACACCAGUACAUCACUCUGACCGCCCGGCACACGGCGCUUUCAAUCACCCCCACUCCACACUCGUUUCCAACCAUCUUUCCACAGAUGAGGAGGCCUUUUGCCACCAUCACCCCCUCAUCUCACAUGGCACUAGCACUGUGCUAAUGCGAUGAGUGCAUCCAUCAAACACACAGCAGCAAGCAGUGGCCGUCUUGUCUUGUGGCAUCUGUUGUUUGGCCUUCGAUUCCGUAAUGGCAUCGUCACCUUGCAAUUGCAAGCUUGCAAACAUUUCCCCGGGGGUUGAAAUGGUCAGAGCAAUUGCAACCUACAGCCUCCCAAAGUUGGGGUCCCCCCCCCCCCUCCUACUACCUCCCUGCCUGGCUGCCUCCCAAGUUGCUGUCAACAAUUUACUCUGAAUAAUUGUGUCCUUUUUUCGGUGUCUGAUUCUAUUUGUUCUUGGGUAAGUAGUGAAUCGGUUGCGAUCGCAGAAAGACCUAGCGGUGAUAUGGAAAUUUACCGACAUCAGUAAGACCGCGUCGAUGUCUAAAACGAUAACGUUGUUAGGCUGCGUUCGAGAAGGUAACUUUCCUAUCCUUUUUCGCCACACACAAGAU
Sequence
(OSA-LNCN7402.2):
CGCUCAAAUCGGCAUGCUCGUUGCCAAACCCCUUGUUCAUCGCGCUACACUAGUGAGCCCUCCCAUUCCUCCUCCCCAUCUCCAGUGGCUUAUGUAACCGCCGCUCUCGUCUCCUAACCUCUCCCGUUCCCUCGCCUCCGUCCACCUCUCGUAUCCAUCACCCAUACCAAUUUGGUCACUGCUAUGGGUCAUGACCCAAUUACCCAAUCCCAAUCUCAAACGCCAAUUAAUUCAUUCAUAGGUUCUCAACGUCAACGAGGAUCACUCUAUAGUUAAAAGGAGAAGGGUCCGAGGUCAAUGAGCAGCCGAGCUGAAGCAAGAAAGGCAGGUCAAACACAAACACCAGUACAUCACUCUGACCGCCCGGCACACGGCGCUUUCAAUCACCCCCACUCCACACUCGUUUCCAACCAUCUUUCCACAGAUGAGGAGGCCUUUUGCCACCAUCACCCCCUCAUCUCACAUGGCACUAGCACUGUGCUAAUGCGAUGAGUGCAUCCAUCAAACACACAGCAGCAAGCAGUGGCCGUCUUGUCUUGUGGCAUCUGUUGUUUGGCCUUCGAUUCCGUAAUGGCAUCGUCACCUUGCAAUUGCAAGCUUGCAAACAUUUCCCCGGGGGUUGAAAUGGUCAGAGCAAUUGCAACCUACAGCCUCCCAAAGUUGGGGUCCCCCCCCCCCCUCCUACUACCUCCCUGCCUGGCUGCCUCCCAAGUUGCUGUCAACAAUUUACUCUGAAUAAUUGUGUCCUUUUUUCGGUGUCUGAUUCUAUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
89.43%
ME_num:
MEP:
9.35%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.96
Avg Expression:
1.75
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -4.37320263040562 | 0.0358608386545517 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 5.33042712336034 | 1.41205535387383e-06 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.96033139722741 | 0.0484335891271538 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 5.93902261157404 | 0.0185793443289242 |
| 5 | 9311 // leaf // control--/--9311 // leaf // salt | 1.93306757228163 | 0.0242934102565908 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -4.18576724502725 | 0.0399611755781016 |
| 7 | 9L136 // leaf // control--/--9L136 // leaf // salt | 1.8136400460531 | 3.22348366762262e-05 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.8408474239214 | 0.0365034759777024 |