Chr:
Chr8
Start:
27129282
End:
27142139
Strand:
-
Ref_name:
OSA-LNCN7398
Sequence
(OSA-LNCN7398.1):
GCAAUGAACCAUUUUCAUUAGAAUGUAUCCAAAACCUUCACAUCUCGAACCGCUUGGUCAGACACAUAAUCAUCCACAAGUUUCAGUAAGGUGAAACAUUUUCGUCGCAAAUUCACACGAUACUGUAACCUUCACAUCUCAAGUCACUUGGUCAGAGAAUAGAAGUUCUCAGCAGCUAGUUUCGGCACAACACUUGAAAGCUAAGAACAAGAAGGCAGGUUUGAAAACAGAUUAUGCUAUUUCAUAAUCUGAUCCCAAACAUUCAGGUACGCUUUCAGAAAUAAAGGUACAAUCGGCUAGGCUAUUACAAAACUGACAAGGUAUAACGGAUCCAUCCCUUGCACAUGAAUUACGACUGGGCAUAGGUUCUGCACUAAUUCAACUUCUCAAUUAAUUCAUUGAUUUUAUCUUCGCGGUUCCCUGAGU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
23.37%
ME_num:
MEP:
65.65%
HE_num:
HEP:
10.77%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.90
Avg Expression:
15.32
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Caidao // leaf // none (control)--/--Caidao // leaf // 0.5% Na2CO3 solution for 36h | 1.92636486652349 | 0.0176211528181853 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.00059688626139 | 0.00275164697488795 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -1.94943219834086 | 5.12746190146791e-08 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.46545513566143 | 0.000490880927432531 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -1.37014526317274 | 0.000259610052936041 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.84575893113713 | 6.96643880783226e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.46246133418869 | 7.30981477229516e-06 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | 2.45221504750731 | 0.00791352836055925 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.90138007956761 | 5.77804104365125e-08 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -1.29687380609488 | 9.5457475876371e-06 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.39867999175451 | 0.00330197357705274 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 2.36196857795328 | 0.00356136171210535 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.78718781304752 | 5.30755934340925e-06 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.19796847023351 | 9.26831649852585e-13 |