Chr:
Chr8
Start:
26434604
End:
26446624
Strand:
+
Ref_name:
OSA-LNCN7390
Sequence
(OSA-LNCN7390.1):
AUCUAAAAGGAGGUCGCAAACGCCCCACUAAACACCGAAACCACUCAAAAAAUUGUAAACGAUCUUUCGAUUAUCCUUUUGCAGAGGGGUUGAGAAGAGGAAGUAGGUGAGAGAGAAGAUUAUCAAGUCGUUCCUCGUGCGUAGGUAUAAAAUAGUUUGAUUCUCUUAAUUAUUAUACUUUAUAUAUAUUAUCCUUAUGUGCUGAACUCCUCAAUUAUUGCAGCAAAUACGACUGAUUUGGGUCACUUCAGGUUUGGGCGCUCUUUUUUGUGUAGUUUAAUUAAUCGAAGGUACAGAUCACGCCUGCCUUUGUUGGUAGUACAGGCCUAUUUAGUUCGCGAAAUAAAAUUUUUUUAAGUGUCGCAUCAAUGUUUGAUCGGAUGUCGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
10.98%
ME_num:
MEP:
42.68%
HE_num:
HEP:
46.14%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.83
Avg Expression:
52.06
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.47908389761598 | 0.0424686482597286 |
| 2 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -5.3402253420975 | 5.46217716005865e-06 |
| 3 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | -3.52306219022712 | 0.00638764998074531 |
| 4 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -4.06407365666933 | 0.00137572449241019 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -3.68209371432981 | 1.43527761797619e-05 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | -1.90392910452406 | 0.045166917744294 |
| 7 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | -2.8394497856805 | 0.000727349755834232 |
| 8 | WD20342 // leaf // none (control)--/--WD20342 // leaf // 0.5% Na2CO3 solution for 36h | -6.14096310685749 | 0.011413312480986 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | -1.72161723483874 | 0.000959224002820548 |
| 10 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.89395916531189 | 0.00409409424710876 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | -2.40066106157573 | 0.0285592223105707 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | -1.65667411783671 | 0.00985461853717862 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | -3.26433645532408 | 2.61358027461233e-06 |
| 14 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | -2.73899527904028 | 0.000145098772270493 |
| 15 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -2.70535740467332 | 3.39570936714123e-05 |
| 16 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -7.26450863516746 | 1.84127584536676e-47 |
| 17 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | -3.18826460259694 | 9.4157568330914e-93 |
| 18 | Nipponbare // leaf // Drought;Long_Day--/--Nipponbare // leaf // Drought;Short_Day | 3.5909449655774 | 0.00576664217687809 |
| 19 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day | -1.16254634363603 | 9.69312956198884e-10 |
| 20 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.49152956690388 | 0.00048216945288123 |