Chr:
Chr8
Start:
25749766
End:
25751374
Strand:
.
Ref_name:
OSA-LNCN7379
Sequence
(OSA-LNCN7379.1):
UGCAAAGCAAAACUACAUGUUUGAUGGAAACAAAACAACGAACACACAGAAAAUAGGGAAACCCUGUAUUUUAUUAAUCAUGAUUCAUUAACAUGAAUGUUUACAAAUACAUGAGAGCUCCCGCAGGAGUUCGCCUUUUGCCUUCGUGAGGAAUGCUUAAUGAAAAGGUAUGCUGACUGGAGAUUGCGUGCAGUCCGUUGAUUCCCGACGCCUAACAAUGAGGCUACCGGUUAAUUACAUCCACAGGACGAGCCUAUGUAAUACCUCCGAUUAAGCUGCGCUUUAUGAUCGUCGUCUUCAAAGUUGUUUGCUCGCCGAAGGUUGAGGUUGGUGCAGAUUUAAUGUUGAAUACAGUGAAUGUGGAACGGAUGGCUUUGUUUCACCAAAACCCGGUCACAGUACACUACCACCACGUCGGAGUGCGGAGAGAAUUUGGUGAAGCGGGUGACCUUUGCCUCGUCGGUGCCCAGUCAUGUACCCCGGCCUUCAUCAAACAUGGAUUUUAUUGUUGCUUUUGCCUUGUCGGUGCCCAGCAACGGUGCAUCCGGUUCCCGUCCGUUUUAGACGUGUUAAUAGUAUAGUGACCUGGCCUUGUCGGCACUCGGCCAUGGUUUCGUCUAGCCUCGUCGGUCAUAGACAAAUGAAAUGAAUGAAUAGCUGUAGCCUUGCUAGCUUUAGCCAAUACGUCGUUCGGCCUCGUCGGUCUUACACAUAGCAUAAAUAAUGAUAAUCCAGCCAUUUCAUCUCGUCAACACUCGGCCAAGAUGUCGACGUGUGUUUUAAAUCUGCACGCCUCGCCCUCAUGGCUAGCGUUAUUUUAUUUAGCGAAUAUCCCCCGUCCAUCCGGUAGAAUUUGGAGAGGGAAGGAAUUGCUCCCGUACAUGACAUGCACGAGGCAAUAUGUGACUCAUCCGGCAUGAAUAUAAAUAUGUAUAAAUCAUGGUUGGUCUGAUGCCAAUAAGACUCAAACUCAUCCCAAGUUUAUAUAUAAAUAAAUAUCCACAUCCAAUAUUUGAUAUUGAUAAUUUAGACGGUCCAACCCUCACGAAGGUCAGGCUCGCCUUGUAUUUAUUUGUAGCUCAUAUUAAUCGCUUGACAAAGAUGACGUGUGUGUGCAUGCGCCGCUGGGGAUACUUAUAUCCAUGGCUGACAUAUUCAUCAGUACUCCACUUUACUUUUCUGUCAGCCGGGCCACGCAACUGCGCAGCACUACGGCGUGCAUCUGAUCUUUUUGCUCCCCUGAUGUUUUAUCAGGCCUGCAGCACAUGCAGAUUAGCUUGAUGACGAACACCGGCACAAUCGUCGCCGGCAAUGAUUAAUCUCCUCGCGAAUUGCCGCCGAUGGAAUUUAAUCUCCUUUUGCCUAAUCGGAAUCAAGCUCCUAAUCAAAUAUUUGUGGGUGCGUGUACGUGUGGUUUAAGGUUCAUCGCCGGCUCAGGCUUGCGUGCUGUGCAGCGCCCGACGCCGGCGACGGCGUGUGAUUGUGUAUCUAUUGAUAUAGGCUUCUGGAUGUAUGGGUGAUUGAUCAGAUCAGAGCACGCAGCAGGGUUGCCCUGCUACGUCUCCUCCUCUGCCAGCCGCCUCUGCGUCGGGGGUUUUCUCCAAUCUCC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
77.03%
ME_num:
MEP:
12.6%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.89
Avg Expression:
13.92
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 17.5h | -3.21815942023741 | 0.033022093079927 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 8.70684139188827 | 5.30337552301276e-11 |
| 3 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | 2.57728664752827 | 0.0479435711236227 |
| 4 | Nipponbare // root // "mock,14_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),14_days" | 5.87819962339133 | 5.94020240863481e-08 |
| 5 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | 6.27835507275925 | 2.47255715850585e-16 |
| 6 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.27868145622633 | 0.0116797074521746 |
| 7 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 8.63594070850247 | 5.21204502126794e-11 |