Chr:
Chr8
Start:
25207668
End:
25208655
Strand:
-
Ref_name:
OSA-LNCN7368
Sequence
(OSA-LNCN7368.1):
ACCAAAAUAGUUCAAAUUAACGUGCACAUAUCAUGUUUCAAGCAAGUAAAACAAACACAACAUUUACACACUCGACGGAAACAACACAUUUCGCCAUGAUCAUGGUGUCGAGUCUUAGAUUUCUACUACAGAAGUGGAGAAUGAUUUCCUAUUCCUUGAGCUUGAUCUAAAAAUUAUUAGCUGCUAACACCAAGCGCCUAGGCAACACCUAGCACUGCACCUCACUGACCUAUUAAGUGGUUAAUCAUCUUUUACAUGAACAACUGGGAAGAGCAUUAUCCUGACUUUGGUCUUGUUAGGCUAACAAGGUUAAGGUCUUCAUAUGCAGAACUAGAAAUGAAUAAGAAAGAACUGAGAGCCAUCUGAAUAAUCGGGUGUGUGGCACCUCACUGACCUGGGUUCAGUCAUAAUAUCAUUAACAAGCUUCUCACCUAUAAGGGCAGCAAAAGUUUGCAUUUCCAGUGGGAUGCGAAUCUAUGGACUAUGAUGUAAAUCCAGGCCUCAACAAUUGCCAUCUCUAUGUUCAGCAUGCACACACAUGGUGCACACAGUUGCAUGUGUGUGUUGUGAGUUGCGGUGUCAGAGCCUCAGAGGGCAAGCGUUCUCCAACAAUCUCUCUACCAAAAAGCCUAGCGCCGGAUUGACUUCUUGUGAAAAUUAAAGGUACUAUGAACUAUUGAAUCAUCUUAGAAGAAGUGAAAGCGACAUCUGCAAACCUUUUUAAAGAUUUAAUGCUAGAAAAAGGUACAAUUCCAGAAUGAAAAUACAAAAGGAACAACCAUGAAGCAUACUUGGGGAUACCACCUCCGUUUCAGAUUAAAAGUUAAUGGCAUUUGCUAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.33%
ME_num:
MEP:
84.35%
HE_num:
HEP:
7.11%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.58
Avg Expression:
5.19
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 1.03938377924266 | 0.00491342010877567 |
| 2 | BR-IRGA_409 // spikelet // control condition (29C) for 7 hrs--/--BR-IRGA_409 // spikelet // high temperature treatment (38C) for 7 hrs | -1.22281763447695 | 0.00710659095750436 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 1.01088431242199 | 0.00163314900499303 |