Chr:
Chr8
Start:
25163577
End:
25164904
Strand:
.
Ref_name:
OSA-LNCN7366
Sequence
(OSA-LNCN7366.1):
UAGUAUUAUAAAAUGAUCAGUGGUAGUAUAUAAAUUCGGUGGCGCCAUUACGCGAAGCAGCUCCAAUGGGAGCCCAUCACAUAGACGAUCACAUUUCACGGGCGCAUGUGACCCUGUUUUUUGUUUGUUGCUUUCUUCUCUCGAUAAAGAGCUGCAUAUCAAUUCUGACCAGAAAUCACCGUCGCGUGGCUGCGUGCUCAGAAAUCAGGAAAGCGACUAUCGCCUUUCUGACCAGUCCCCCACAGGCCACACAGCCUCUGCGUAUGUAAUUCUGCAUGUGUGUGUGCAUCAUUCAUUCACGGCUUCCAUCCAUCCCCAACACCACCCGAACCCCUUCGAAAAGAAGAAAGCUACUCGCACGCCAGCACGCGGUCGGCUUCCCCUCCCGGUCUCCCGCCCCGCCCGCGGCGAGGCCGGCAGCGUGACAACCGCGUGGAACGACGAGAGGGAGGCGAGGCGGCGGGCAGUCUCAACUCUCACGGCAUAGACGAGACGGGCCCGUGUGGUACUGUGGUGUGGUGUGGUGUGCUGGUAGGGGCUCCGCGGCGUAAAGGCGCGUGCGUGGGUGCGGCCUCUUUUUCGUAGGCCCCGUUCCGCCCCGCCCCGCCCCGCACGCACCCACCGGUUCACCCAAGCGAGCGAAGCAGAGAGGCAGAGGCAGUCAGGCAGAGGGAAAGGCAAGGGCGCAAGGCAGGUGAUGGAUGAGGCGAGCACGAGCAGAUCUGCAGAUGGAUGCAGCAUCGCCAAGGGAAGGUAGAGAGGAUGGGUCCGAGGGGGAGAUGCCAAAGGGGCGCCUGUGCCGAUGCCCCGCCUUCCGUUCCGCACCGCAGCCUUUGUCGUCUCGUCUCCCCAUCCCACAGGCGUUUCCCUGGCGGGAGUGGGCAGGCAGGAGCAGCCUCUGCUAUACUGGUGUCCUCUGCUCGUGCCAUGAAAAAUUUCUGGGUGGCCAGUUCACACCUGACCUGAUACGUGUUUUGGUCAACAUUUCGCUCAACGCUUUAGACCCCCCUCCUCCCCCCCCCCCCUCUUUUUUGCAACUAGUACGGUUUGCUUUGUAAUCUAAUUAUGACAUAUAUUAACUUAUUAUAAAGGAAUAAAAAAUGAAGUCUCCACGUUCACUCUCACGGGAUAGAAAUUCUCAUAUUAAUUGGAGAAAAAGAAAAAUAUAGUCCAUAUAGAAAUACAAUUUAGAAAUAAUUGAAAUUCGGAAUUAAAAAAAAGGAAUAUUGGAAGAGGAGACUAGAGUAGAGUCCAUAUAGAAAUACAAUUUAUAAAUAACUAAAAUUCGGAAUUAAAAAAUAAAUAAUAUUAGAAAAAGAGUAUAUAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
52.24%
ME_num:
MEP:
44.11%
HE_num:
HEP:
3.46%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
root
Tau :
0.85
Avg Expression:
2.72
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 2.83443578088564 | 0.00457293691896077 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.44676119789681 | 0.0175006459703745 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 2.64478769756193 | 0.0176797354986748 |
| 4 | IR64NIL // root // control--/--IR64NIL // root // Al | -1.78348032630854 | 0.000143737242266243 |
| 5 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 1.08503024826119 | 0.0301541365752413 |
| 6 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.40692339757029 | 2.06284419957084e-06 |
| 7 | Nipponbare // root // "mock,1_day"--/--Nipponbare // root // "auxin(50CM_2,4_D),1_day" | -2.21573871083031 | 0.0143135371391858 |
| 8 | Nipponbare // root // "mock,7_days"--/--Nipponbare // root // "auxin(50CM_2,4_D),7_days" | -1.95876871949191 | 0.0196441184808659 |
| 9 | 9311 // leaf // control--/--9311 // leaf // salt | -2.03421579138792 | 0.00152296764783756 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 2.77985563274181 | 0.0024299997265262 |
| 11 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | -1.62483775075612 | 0.0339490812782698 |
| 12 | 9L136 // leaf // control--/--9L136 // leaf // salt | -2.32135368308501 | 8.05948323678473e-07 |
| 13 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | -2.50299073689864 | 0.00770246239099355 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 3.20803469326842 | 0.000106755678036245 |