Chr:
Chr8
Start:
24862861
End:
24867613
Strand:
-
Ref_name:
OSA-LNCN7356
Sequence
(OSA-LNCN7356.1):
CUCGUCAUUAACACAAUCUAACCAACUGAUCCCACCUAACUACAAAUGGUAAUUUCUGCACAGUGUGGCCUGGACACAUCAGUGUAUGACGUGAAAGCUGAUGCUGCUAAGGUGGCUGGAGGAGCUAAAUGACUUCGGUAUCUUUUGUGCCAUGCUGUUAUAAUGAAGAGACCAGGGAGAUUUCUUAAUUGACACAAUGAUCAGAAAUUACCAUAUGUCACCCUAAAAAAAAUAUUACCAUGCGUCAUUUACAGGUUUUCUUGGUUGAUCAGAGUCAUUAGUUAACAGAAGAUCAUCACACAUGCAGUUUUAUGAUAGAUCGGACUUUGGAACGGGUCUAAAGGGAUGCAACCACCUUCUUUAAAAUGCGAGUGGCCACUUGGAAUUUACACUUUUGUAUCCAUAUUGUAAUUUUCUAUACUACUUUAAAAUAUUGG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.26%
ME_num:
MEP:
73.37%
HE_num:
HEP:
10.16%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
coleoptile
Tau :
0.86
Avg Expression:
10.77
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | 2.72180875927277 | 1.44477881230938e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | 1.90022085611008 | 0.000265260964601007 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 2.89200021776914 | 4.43611274916317e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | 4.59091731704389 | 9.19756836043226e-23 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | 3.03499479023107 | 1.75606524260886e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | 1.66930623076095 | 0.00602056705893185 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | 1.42976556160274 | 0.0218779548000411 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.65559800449192 | 0.00367488625787401 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | 1.7510771096639 | 0.000543732591816735 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | 3.14734952272349 | 2.83248918155437e-16 |
| 11 | Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae | 1.70158783456476 | 0.00443094188178548 |
| 12 | Nipponbare // panicle // AM--/--Nipponbare // panicle // PM | 1.54341069039619 | 0.028796322982408 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | 1.26563737512475 | 0.0435504009202898 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | 2.06594264386331 | 2.95390330577581e-06 |