Chr:
Chr8
Start:
24580501
End:
24580912
Strand:
-
Ref_name:
OSA-LNCN7348
Sequence
(OSA-LNCN7348.1):
CCCGAGGUCCUUCGGUGGUUUUGACCCCGAUUUUAGUCUACGUGGCGGCUAAGUCAGCCACAAGAGAAGGGGAGGGCGGCGGCAGCGUGACCGCGGUGGUGGAGAGGCAGCGGCAACGGCAGGCGAGCGCAGCUGCGGAUGAGGAGUGGAGGCACCGACAACUCCGCACCGCUCAGCCUCAUCGGCGGCGGCGGCUCCGGGCAAGGAUAGGGCCGCUGCCGCCAUCGUGCUCCCCGUCGUCCACGCCAGCGUCUCACCGACGCGACGGUGGUGAUGGCAGCGACACUAGAGAAGGUAGGCGGCUCGCAGGGACAGAGACGAC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
84.35%
ME_num:
MEP:
13.82%
HE_num:
HEP:
1.63%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.97
Avg Expression:
2.37
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -2.39934669940663 | 0.0126121208430232 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 2.8076165918742 | 0.0312126856872018 |
| 3 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.07139779130877 | 2.57191327545866e-06 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 3.21827560472904 | 0.00371839155462583 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -4.83661725380284 | 0.0150329222057175 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.99153725326985 | 0.0293036513813019 |