Chr:
Chr8
Start:
23993116
End:
23995173
Strand:
-
Ref_name:
OSA-LNCN7334
Sequence
(OSA-LNCN7334.1):
CUGGAAUCAACAAAUCAUUAUUUACUUGUCCAAUUUCUAGUGUAAGUGGCCGAAGUACAAAGUGUGCAUUUAAAGUUGUAAUGAGUACUAUGCCAAACUACUCUAUUGAGGUCCAUCAUCAUACAAAACAGCAUAAUAGAUCACCAUUACUCAGCACAUGUAUGGUUCAAUACAAACAACACUAUGUCAACAUAUAUUUAAUAAACACGGUAAAAAGAAUGCUUGGUAGACUAUUUACGAUGAACACGCACACUACGGGAUAUGCAUCCCUGCAUACACAAGUCCAGCAAAGCCACCAAGUUUGAUUUAGGAUGAAAGUAUAAAUCAUAUACCACAAGCUUCUGUCUAACAGUAUCGGUCCAACCAUCUUAGUAUCUAAAAGAACAACUUAAAAUACUAGAAUUAUAAAGAACAAAUUUACCAGCGAUAUAAUCUGAUUUGUUCAAUCCAGCACUUAAAAAAAGUCUCAUUAUAAUCUGAAACUUGUGUAACAAAUAGUUAAUUUCCAUAGUUAUAAACCUUCAUGUUGGCAGUCAUGGGGAUCUACAUAUUAAAUUUCAAGUCGCUUACAUUAAAAGCUAUGAAAAUUAUUUUUAUAAAAAAAUCAAAUUAGUAAAGAUGAUAAAAACAUUAACUUCUUCAUUAUAAGGUACUAAAUGUAGAUAUGAUUUAAAAUUUUUAUUCUUGAAGAAAGCUAUAUACUCCAGGUCAUAAAAACAGAGGUCUAUUUAUGUUCCUGAUCAGAUUGUUGCAAUUACAACUAAGGCAGAUAUGAUGCAAAUAUAAAUAUUAAGUGCACACAAAUUCAACUGAAGAAGUAAAAUAUUAUCUAGAACGAAAACAAAAUAUUUUUUACUUGACAAUCUCACGUUGUUCCAGUACUUAAAAAGGAACAUAAUGUAAGAUGUUGAUAAAGACCAUUACAAUAGCAAUAGCCAUGGCUUUGAACUAAUAUGGCAUCUCCAAGGUUGUGGACAGAUAUCCUAUCCAUCCAUCACGUACAGUGCAAAUCACUCCGGUUGCCUUUAGCAACCUAUGUGACAUGGACUGGAGGGUGCUAAGCAGCUCAACCUUUUUCAUGAACCAGUCCCACACACGGUACACACCGACAUCUCAUCGUCAUCGAGCUCUAUCAUCUGUAUGUGCAUUCGAUCACCGUGCAUGGCAAAGAGUAUGCCCAUGUAGCGUGUCAUCUUCCCUUUCAAAUUAUUCCUCGAGAAAAUAGCCCAAUCAACAAUAGUGAUAGCGUUGCCACGGUACCACAGUGCCGCAUUUCAACUCAUCCAGUUACAGAGCAACACGCAGACGUCCCCACCUUCAUCGGUAAUCUGGUCUAAAGCACAGUUGUUGUGCAAGAACUUAGGUAGGAGAGGUAUCGUCGUGGUCUCCCUGGUAAAUGGGUUGAUGAACACGACAAAGAGGUCGUCAUCUUUGUCGACAACAAGAAGGUGGCCAAAGCCAGAAGCAACUACCUUCUUGCCCUUGAUAGAAGGACUUGUAUCUUGAUAUCUUCUCUAUGGAGGAUGAGUAGAAGACAAUCAAGGUACAUGUCUGAAUGUCCCAACUAUCAUGGGCGAGCAAGUCAUUACUUUUAGCCCUGGUUACCUCUUUGCCAUCAACAAAGAUUAUCUAUUUGCCGUGCUCGUCAACCCGCUUAACAGGAAGAGCACGGCUGCCUCGCCUACCUAAGUUCUUUCACAACAACGACGCUCAUGCUGGAUUACCGCUGAACGCGGGGACAUUUGUGUGGCGUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
46.75%
ME_num:
MEP:
44.72%
HE_num:
HEP:
8.33%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
embryo
Tau :
0.88
Avg Expression:
7.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -3.73446597149927 | 2.85852151576029e-28 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.69588620466989 | 1.06075430583848e-30 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.82156334147004 | 6.85183277300238e-25 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -3.51913711509059 | 6.50227303991727e-22 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -1.91068117156838 | 2.69236129276266e-11 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | 1.0691041890252 | 2.62548936865738e-10 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -3.00484314180797 | 9.32658797888509e-28 |
| 8 | Nipponbare // leaf // H2O_control--/--Nipponbare // leaf // Xanthomonas_oryzae_pv._Oryzae_MAI1_inoculated_24hpi | 4.23731958404242 | 2.14555049484876e-07 |
| 9 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.55538406793943 | 5.17586501375947e-05 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.15328654151629 | 2.52326231986475e-05 |
| 11 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | 3.41205540398545 | 2.93534936500543e-08 |
| 12 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP2286 | 3.2815323553863 | 0.00493423128497942 |
| 13 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS279 | 2.01169610683546 | 0.00257715886075805 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | 1.63040281571916 | 5.31702064778639e-25 |
| 15 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.41449044899172 | 8.4067351382051e-15 |
| 16 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.13513752094318 | 2.64150877687169e-18 |
| 17 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -3.56272974450493 | 3.22604009613191e-36 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.09415081942573 | 0.01262367711854 |
| 19 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.91026540512084 | 1.03133754070893e-07 |
| 20 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BXOR1 | 3.33414397873078 | 0.0372700008615568 |
| 21 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_RS105 | 3.50778271998931 | 3.64467394241416e-05 |
| 22 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7341 | 3.91901355577928 | 1.86367768133498e-06 |
| 23 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 4.06421291295688 | 0.000164522121709704 |
| 24 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | 4.29852392471166 | 6.68692675857885e-09 |
| 25 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | 3.74364709682938 | 2.12635066137956e-06 |
| 26 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | 4.29846170451118 | 6.65762058376245e-09 |
| 27 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | 4.29835755817774 | 6.74968312216225e-09 |
| 28 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 1.5395966131577 | 0.0108648402432765 |
| 29 | Nipponbare // shoot // No_DIS;_mock_inoculated--/--Nipponbare // shoot // No_DIS;Fr13_inoculated | 2.42384239007853 | 0.00786998567861236 |
| 30 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.74546342216541 | 5.426750675755e-19 |
| 31 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 2.00031657902926 | 0.000273013569633291 |
| 32 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.48898199698702 | 4.85071351942351e-25 |