Chr:
Chr8
Start:
23869159
End:
23877029
Strand:
-
Ref_name:
OSA-LNCN7329
Sequence
(OSA-LNCN7329.1):
CGAGAAGGUUAACGCGACGCGGGGAUUUCCGCUUGCUUUGCUUGGGUUUAUUCGAUUAAAUAGGUUGUCCCGGUUCGGUUUCGGUGUGGCGUCGCACGGAACAAUCGGCGGCGAGGCGGUCGCUUGGUGCGAGGACAACGCACUGGCCUCGUUGUCGCACACAAGACAAGCAGAUUGCUUCUGCUCCUUGCUUUCCUAGGCGUUACAUGUGCUUUCGCAAAGGACCGGCACGGUAUUCUCAACACAUAAGUGUCCACUAAUCCACUAUGUUUGGUCUGCCGGCCAAAUGAGUACGGUAUCACCGGUGCGAAUGAAGGCGACGGAUGCAGGAGUUUCAUACGGGUAUCCCGGCGAAAACAAAAGGAGUUUCAGAUGGAUAAUCCAACGAUUGACCAAAGGAGUUCCGUACACGUUUGCUCAUGCGUUUAGCGUUUCAGGUCCACUCCGUCAAG
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
2.03%
ME_num:
MEP:
49.59%
HE_num:
HEP:
48.17%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
caryopsis
Tau :
0.69
Avg Expression:
20.61
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.65812314300749 | 6.03927698298973e-06 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -2.04044472439927 | 0.000111036149182479 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.39885031026322 | 1.60622569730083e-06 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.70222386829313 | 0.0044618982309763 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.57289296416083 | 5.49327973593253e-05 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -1.34257288298798 | 0.00239978570678666 |
| 7 | IR64 // panicle // Dawn--/--IR64 // panicle // Dawn + 10.5h | 3.36536449519387 | 0.00363780810832268 |
| 8 | IR64 // panicle // Dawn--/--IR64 // panicle // Dusk | 3.07754527910377 | 0.031858254462077 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -1.28783053844511 | 0.00855869454793621 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -1.86078801290678 | 8.44337522970014e-05 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.4162199223535 | 1.22152318064353e-05 |
| 12 | Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day | 3.43505985839428 | 0.00537085696466508 |
| 13 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -1.30474645996492 | 0.00517706354333424 |
| 14 | Nipponbare // leaf // Watered;Short_Day--/--Nipponbare // leaf // Drought;Short_Day | 4.71040500870799 | 8.33222336316026e-06 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -1.66882519096361 | 2.97985096970845e-05 |