Chr:
Chr8
Start:
23588556
End:
23601021
Strand:
-
Ref_name:
OSA-LNCN7325
Sequence
(OSA-LNCN7325.1):
GGAAGGGAAUAGUAGGCAAGUAUAGCUGGGAACAGGAUGCCUUGCUUGCUGGUGGUGAGUAGGAUGAAAGUGGUACGGAUAAUUUCUGAGUUCCGAUCCCGGUUUUUCGGAUGCGGAUUGUUGCGGUCGAAUUUUUUUCGGAUAUUCUCGGAUUCGGAUACGAAUUCGGAUAGUUUUUCUCGGAUACAAAUUCGAAUACAGUAGCGAUGGUAUCCGUCGGAAAUUGGAUUCGGUCGGAAACUAUCCGACCUUUUUUUGCCAGAUAUCCGAAUCAAAAUAAACAACAAAAUCCAAAUUAACAAACAUCGAAAAACGCUCGUCGCCGUCCGCCGCACACCGUCGCACGUCGCACGCCGGAUCCGCUCGUCACCGUUCGCCGCACGUCGUCCCCUCGCGCCGCCGAGCCCCAUCCGUCGCCGUCGCCUCACGACGUCGAAUCCCGCAACUGCUGGGCUGUCGACCCCGGAUCCGGCCGCCCCGAGUCCGGCGUCGCCGUCCGCCACACGCCGUCGCCUCGUGCUGUCGAGUUCCCGCCGUCGCCACGACCCGGCCGCCCCGAGGCCGGCGCGGCUGGUUCCGCUUGUCGCCGUUCGCUGCACGUCGUCGCCUCGCGCCGCCGAGCCCCUGCCGUCCGCCGCACGAGGCCCUGCCCCCGACGUCGCCGUCGCCGUCCGCCGCACGCGGCCCCGCCCCCGUCGUCGCCGUCGCCGUCCGCCGCACGCGGGCCCCGCCCCCGUGGUGGUCGCGGGAGCCGGGAGGAAAGGGUGGCGGCUGGGAGGAGAUUGGGAGGUGUGGGAGAAACUAGGGUUAGGUUUAUAUAUCCCUCCAUCUAAAUGGGCCAACGGGCCUAAGAAUUAGCUAUUAAGUCUAUAUGUCCUCCCUCAACUUCGAAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
8.54%
ME_num:
MEP:
64.23%
HE_num:
HEP:
27.03%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
callus
Tau :
0.82
Avg Expression:
20.21
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -2.5191959040334 | 1.89827867929813e-09 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -3.1448074933844 | 1.03567803690786e-12 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -3.02954108047115 | 2.03487663115971e-12 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -2.09034859462113 | 1.7314510719903e-05 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -4.17922502644278 | 1.79545223966471e-10 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.22639160895392 | 2.9648934863956e-07 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 1hA | -1.00833278390486 | 0.00560459337674755 |
| 8 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hN | -1.96050867795375 | 2.15973486785586e-06 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.44298374133049 | 9.05083303626717e-11 |
| 10 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 3.17088369683959 | 0.00215376101400391 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 3hA | -2.28500199532299 | 1.3316289411942e-08 |
| 12 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 3.43701083212238 | 0.000455105909080824 |
| 13 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 2.30359992790044 | 0.0439545476535974 |
| 14 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.78299488898288 | 1.76036768175099e-11 |
| 15 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.56298381316587 | 3.49916570210953e-11 |
| 16 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | 2.71440225230063 | 0.0199652726637094 |
| 17 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | 2.64348079764032 | 0.00851779669611099 |
| 18 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7331 | 5.53428458837415 | 2.3359377508571e-11 |
| 19 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -3.17364528656293 | 6.38508201902974e-10 |
| 20 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -3.01155811065128 | 7.73805857268308e-16 |