RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7316

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

22808397

End:

22815111

Strand:

+

Ref_name:

OSA-LNCN7316

Sequence
(OSA-LNCN7316.1):

CCGUCUUGGACCUCUUGGUAGUAGGACUCGUGCAAGACUGCAAGCGGUGAAGUGGAUUGCUAUUGGGAAAAAAAAAAGUACAAAUUACCCCCGAAUUAUCGCGGUCGGCCGAAUUCCCCACUGAACCUAAAAACCAGACAUGACUCACCCCGAACUUUUCAUACCAGACGAAUUACCCUACUCGACCCAAUCCAGACCGAUUUUAUCCUACAUAGCAUACGCGUGACAACCCAAUCAUCAUUUUUUUAAACGUGGUGGGGCCCACUUGUCAUAUAUACUCUCUCUCCUCUUCCCCCUC

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

72

LEP:

14.63%

ME_num:

268

MEP:

54.47%

HE_num:

151

HEP:

30.69%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

callus

Tau :

0.69

Avg Expression:

12.22

Tip: OSA-LNCN7316 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min"2.279860859146840.0383957310772591