RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7312

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

22721107

End:

22722028

Strand:

.

Ref_name:

OSA-LNCN7312

Sequence
(OSA-LNCN7312.1):

ACCCCCUGUGAGUAAAUCACUAAGCAGUUGUGUGAAUCAGAUUGAAGCCGUGUAUUCCCCAUCUCCAGCACGGCCUAGCGAGUGGCGGUGGCGGCGCAACAGCAGGGUGGGCGCGGCAACGGCGACCACUGGCCGGCAUGCAGGAGGUGCGGCGGCGACCGCGGGUCGACGCGGCUCAACCGCGGGCCAGCACGGCGGCGGCGACCGUUGGCCAGCACGCAGGAGGCGCGGCAACAGCCGUGGGUCCGCGCGGCUCUACCGCGGGCCAGCGCGACAGCGACAACCAUUGGCCGGUGCGCAGGGAGGUGCGGCGGCAGCGCGAAGAAGAGGCGCGACCUUGGUCAGGAGGCCCGUUGGCAACUGCGGGCCUGCACGGUCCGGCGCGACGGGGAGCUCAGGACUGGGUGAGUACGGCUGGGGAAGGGAAGGCGUGAAGGGGAAGGUUGGCGCAGGGGCUGUUAGGGGCCAGCGGUGCUGGAGGAGGCAUAGAUGCAGCAGGGCAAACGGUGCUGGAGGAGAUGCAAGGGCGGUUGGCUGGCGCUACUGGACUUUGUAAUGUUUGCUAUAGCUGAAAUUGUGUUGAAAUUCAGUGAUAUCUCCAUGAAAGUAUGUUGAAAUUUUGUGAAAUGAAAUCUUGUCUAAUUAUUGCUGAAAUCAUGUUGCAAUCCUGUUGAAAUUUUGUGAUAUUUGUCAAGCUAUUGCUGAAAUCUAGUCAAUUUUUUAUACAUUUCAAGUAUAGCAAAGUUCAGUUCGAAACAUUUGUAAAGUUCAGUUCAAAGCUGAACUCAAAAAAGGGCAAAUACACAAGUGGACACAUAUUUGCACAGGGGUAUACUCGUCGUUGUAUCUCCGAUCUAACACCGUUAGCUAGUUUUAACGGGACAGGGGCACUCGGCUCCUUCAUUUCAAAAACACAGAGGCA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

108

LEP:

21.95%

ME_num:

347

MEP:

70.53%

HE_num:

36

HEP:

7.32%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

shoot

Tau :

0.68

Avg Expression:

3.67

Tip: OSA-LNCN7312 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated-1.193090040269090.0173515971797184
2Nipponbare // shoot // "Control,22C for 10 min, then 30C for 9h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 9h50 min"1.294268717900020.0220475052179732
3Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Drought;Long_Day-2.208224106062792.55289910360191e-06
4Nipponbare // leaf // Non-inoculated--/--Nipponbare // leaf // Inoculated with Pyricularia oryzae-2.494298602979139.19521421783774e-09
5Nipponbare // leaf // Watered;Long_Day--/--Nipponbare // leaf // Watered;Short_Day-1.087768865494930.0417492753780627