Chr:
Chr8
Start:
22614177
End:
22615884
Strand:
.
Ref_name:
OSA-LNCN7311
Sequence
(OSA-LNCN7311.1):
UCCCGUCCUUUUCUCUCCCAUCCUUUUCUCUCCCCCAUUAUCUUCUUUUCUAUAUUUGGAUCCCUCCCAACGGUUGCUCACGGCGGGCGGCCAGUUGGCAGGUGGUGCGCGGAGGACGGCUGGCGGCCUCCCCAUGGCGGAGCGCGGAGGACGGCGAGCGUCCGUGUCGAGGGGCUUAGGGAGUGGCCGGUCGUCGGGCGGCCUCCCCACGGUGGCGCGCGGAGGUCGGCGGGCUGUCUCCCUACGACGGGGCGCGGAGGAUGGCGGGCGGCCUCCCUACGGCGGCGCGUGGAGGUCGGUCGAUGGGUGGCCACAUCGAGGGGCACAGACUCCCCACAGCGGCGUGCGACGGUGAACUCCCCACGGUGGCGCGGAGGGAGGCGAGCGGCCGGUCGGCGGGUGGCCUCUGACGCGUCCGUUUGUGCUUCUUUCCCUUCCUCCCUCUUGGAUAAUUCAAGAUUUGUUCUUUGAUGUUCUUGAAUCUCAGGUCUCUAUGUUGUUUGGAUGAUGAAUGUGUUCUUGAGAUGAGGGAUGUUGUUGAUGCUACGAGGGAUGAUGGGGAGCGGCUUUGAUGUCGAGCCGGAUUUUUUUUUUGAUUCGUUGGAUAUUAUAGGUGCUGGUUUCUAAACUGGCAGCUAAAACUUAUCUUCAUAGGUGCCGACCAAUAGGUGCCGGCUAUGGGGGUUUCCCAACCGGCACCCAUAGCAUUUUCUAUAGUAGUGAGAAUCACUUGUUUGCUUAUCUAAUACUCCCUCCGUCCCAUAAUAUAAGAGAGUUUGAGUUUUUGUUUGCACUGUUUGACCACUCGUCUUAUUCAAAAAAGUAUGGAAUUAUUAUUUAUUUUUUUGUGACUUACUUU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
93.29%
ME_num:
MEP:
6.3%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
0.92
Avg Expression:
1.01
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 7.54763853249688 | 5.33186623111199e-05 |
| 2 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 10 min" | 8.01832003324427 | 1.35067415429835e-05 |
| 3 | 9311 // leaf // control--/--9311 // leaf // salt | 3.91801902465884 | 1.55746278328611e-08 |
| 4 | Nipponbare // shoot // "Control,22C for 10 min"--/--Nipponbare // shoot // "Heat,42C for 10 min" | 6.91515709461607 | 0.000662906655592852 |
| 5 | 9L136 // leaf // control--/--9L136 // leaf // salt | 3.60519060793018 | 9.06805202349579e-07 |