RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7294

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

21343275

End:

21343748

Strand:

-

Ref_name:

OSA-LNCN7294

Sequence
(OSA-LNCN7294.1):

CUGAAAACAGUCUCCAUACUUAAGAGCUGAAUUGACAUAUUUUAAAAACUGUUCAAUCAGGAAUAGCAACAACUCUUAGCUAAUAUAAGCUGAAGCUUACAUGUACAAAUAUAAGCAACAUGCUUCCUAAAAAGAGCAUGUCCUAUAUCAAGCUUAAGUUGUCCAAAUUCCAAAAGAGAGCUAUUUGAUCAUGUUCAGAUAAUCUUUAUGAAUAUAGUUGGUACAAAAAAAAUGCAUAAAUGUGUUUAACUAGUACAUUAAUUUAUAAUGUUAAACAUUUAUUUCACCGUAUGCAGGGAAUA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

145

LEP:

29.47%

ME_num:

264

MEP:

53.66%

HE_num:

82

HEP:

16.67%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

carpel

Tau :

0.80

Avg Expression:

10.60

Tip: OSA-LNCN7294 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA1.14198259448730.0393468077815488
2IR64 // panicle // Dawn--/--IR64 // panicle // Dusk-1.149922918655670.0420439336059099