Chr:
Chr8
Start:
21208488
End:
21217224
Strand:
+
Ref_name:
OSA-LNCN7289
Sequence
(OSA-LNCN7289.1):
CUCAAGUACAAAUAUCCAGUGAAAUAGCAUAGAGAAAAGUAAUAUCGGUAAUAUGAAGAACCAAACGGUAUCCAUGAUUGUAAGUCAACCAAAGUUCUCUAUCCUGCAGUACAUUUCUCAAUUAAUACAAACAAACAAAGGGUUUCUGCUUGUAUUGGAACUAAAAGCGCCACUUCAGGCCCAGUAGUAGGCUAGGAAGUGAAAUAACCUCGACUACUGUAAUGUUGCACAAGACAAGAUCGGACGUAAAUAUGAAGCCAUAAAUCCAAGGAGCAAUAGACUUGAAAUAGUACCAAGAAGUGUAGACUAUUCAAUUAGCAUUUCAGAACUCCAGAGCAAUUCUCUCUUAGCUACAACACAUACCACCUAAAUGUCAUUGGACAAUGUAACAAGCACCCAUUUUUAGUAGAUUCACCUACUGCUACCUGUAUUACCCAUUACUAAUUAGUACAUUCGAUUUGGUCCAUAAGCCAAAUACUAUACUUGUUCAUCAACAGAUUUAGACAAAAGAUUAAAAAGACAACAGCAUUCCCCAAUCAAAUUUCGUGCAGCAGUCCCCCCCCCCAAAAAAAAUCACAAUUUAAUUAACCUUAAAGACAAAUUCCACCACCAAAUCAUCUAAUCAAACAACCCAAAAACAAGAUCUAGUUCAAGCAUUAGUUCCACAAUAACAGCAUUAAGCACAGCUACUAAUCAGCGCAAACCAGGACCUACUCGUACAUCGGAUACAACACUAACGACGCACAAUCCAUCCGCAUGCGACACUAUAAUAGCCCCGCGGAAAUCCCAAAAUAAAGUAAAAUACAGCGAAUAAAAGAAGAAGCCGCAUCGCGC
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
16.46%
ME_num:
MEP:
82.32%
HE_num:
HEP:
1.02%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
flag_leaf
Tau :
0.63
Avg Expression:
2.80
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | 1.05793558527519 | 8.46178562288751e-06 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | -1.31859889460992 | 0.00232257665783903 |
| 3 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_BLS256 | -1.37333731424302 | 0.000497080077633667 |
| 4 | IR64 // leaf // ethanol solvent (untreated control)--/--IR64 // leaf // gibberellic acid (GA) | -1.49770914945462 | 0.0416112303086395 |
| 5 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_L8 | -1.51306259629114 | 0.000146354123831643 |
| 6 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_B8_12 | -1.53035014637634 | 3.14987841737731e-07 |
| 7 | Nipponbare // leaf // "wild_type,control,2"--/--Nipponbare // leaf // "wild_type,drought,2" | -1.6813125708085 | 0.0481831551729756 |
| 8 | Nipponbare // leaf // 48_hrs_after_mock_inoculation--/--Nipponbare // leaf // 48_hrs_after_inoculation_with_CFBP7342 | -1.35135635156172 | 0.000720203277141005 |
| 9 | Nipponbare // leaf // control--/--Nipponbare // leaf // drought | -1.68140092015263 | 0.0489220556306181 |
| 10 | Nipponbare // leaf // "wild_type,control,1"--/--Nipponbare // leaf // "wild_type,drought,1" | -1.68147801801798 | 0.0482655027657957 |