Chr:
Chr8
Start:
20765685
End:
20773546
Strand:
+
Ref_name:
OSA-LNCN7280
Sequence
(OSA-LNCN7280.1):
CACCCAAGCAUGGUCUAAAUCUUAAGGUCUUUUUAAGGGAAUAGUGGGACCAAGAUGGUCCAACUAUUUAUUACAUUACAUUAUACAUAAAAAUGAAUUGUGAGGUUAUAUGUUCAAUCCUGGAAACAUGUAAAGAUUAUUCUCAGUGUAUGUGCUAGUCAAUCCCAUAAAGAAAACCUUCUUUCUAAGUGUCUUUAUUCUAUUCUCUUCACUUUCAGUCUUUCACAACUGAUGGUUACCAGAACCAGAGCCUCUGCUGAGGAACAUUACUGCAAGGAGCAUGUUAUUUCACAAGGCUAAAAUUCAAGGUGAAAACAGAAGACAUAGAGGGUGCGCGUACUACCUUGAUCGCCAGUCGCCAGCUCUCUGGCUCAUUCAGGACAGCAGCUUGGAGCAUCUCCUCAUUUGCUCUUUACAGGCUUACUCUGGUUCAACUUUAUCCCUGCACUCCAGGUAACGGCUGCAAGAAUCCUUGCAGGGCACAAUGAGCUCCGCUAUCUGUUUCCGCAAACCCAAAGAGAAUGCAAGAAUUCAUUUUCAGCUUGCUGUAAUUCAAGUUCACGAGUUUGCCAUCAUGGAGUACUCAGAU
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
57.93%
ME_num:
MEP:
39.23%
HE_num:
HEP:
2.64%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
carpel
Tau :
0.90
Avg Expression:
3.88
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hN | -1.88835036766244 | 4.357852601469e-07 |
| 2 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hN | -1.34339056216555 | 8.65572673475429e-05 |
| 3 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN | -2.11358968663071 | 2.63941963955189e-09 |
| 4 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dA | -1.39500047697896 | 0.00377066436134116 |
| 5 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 4dN | -2.21530282424354 | 6.28418307605645e-07 |
| 6 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dN1dA | -2.48111669890273 | 1.6944904994307e-08 |
| 7 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 12hA | -2.38348427982093 | 2.07319487540009e-11 |
| 8 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 2.05934192510042 | 0.0422773738246777 |
| 9 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 3dA | -2.63754492473222 | 1.30347747681689e-11 |
| 10 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dN | -2.37460360758659 | 1.98610832498369e-11 |
| 11 | Amaroo // embryo // dry seed 0 h--/--Amaroo // embryo // 24hA | -2.34174986997691 | 1.0209780683481e-08 |
| 12 | Amaroo // embryo // dry seed 0 h--/--Amaroo // coleoptile // 2dA | -2.586360706637 | 6.76865638478586e-14 |