RiceNCexp
Rice Non-coding RNA Co-Expression Atlas

OSA-LNCN7279

Function Link

Tissue-specific Expression analysis
Differential Expression analysis
Co-Expression Curve
Network analysis

Basic Info

Chr:

Chr8

Start:

20665809

End:

20673631

Strand:

-

Ref_name:

OSA-LNCN7279

Sequence
(OSA-LNCN7279.1):

CCAACACUAAGUAUCCUUUCAGACAAUCAAAAGCAUCAUCUGACUGCAGUUCAAAAAAAAGAAAAGGGCACCCUCUGACUUCAGCUAGCUAGAACAAGCCAUCAAUCAGUACACCGCGUCUCGGUGUCGCGCUGAGGUCAAAUUUCGCCACUCAAAGCUGAAAAACAUGGGGAAAAAGGAGGUGCCCUUCACUUGAGUUCAUGGCAAGAAGCAGGGGACUAGAUGGGAACAGCACAACUACUGAUCAGUGAUGCCUUGCCUUGGA

Expression Capacity

HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.

HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.


NE_num:

1

NEP:

0.2%

LE_num:

300

LEP:

60.98%

ME_num:

110

MEP:

22.36%

HE_num:

81

HEP:

16.46%

Type:

HCR (High-Capacity ncRNA)

Tissue Specific Expression

cutoff: tau > 0.9 and Average expression in the tissue > 10


Tissue :

root_meristematic_zone

Tau :

0.76

Avg Expression:

10.77

Tip: OSA-LNCN7279 is not a tissue-specific expression ncRNA.

Differential Expression

cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01


Num. Condition log2(FoldChange) Padj
1Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated2.013870724888590.048212993205024
2Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated3.161130816324310.0345590462432359