Chr:
Chr8
Start:
20706723
End:
20710436
Strand:
+
Ref_name:
OSA-LNCN7278
Sequence
(OSA-LNCN7278.1):
GGGUGAGCGAGUGAUCUAUCGAUCUGUCGACGAACGACGACAUUAAAUAUUUUGUCUCGAUGUCCACCAUGGUCGAUGGAGACGACUAUCAUAUAUACUACAGUGAUCAUAUAUAGGCCAUGCCAUGUCGUUCUCUGGUGAUAGAUGCACGAGGCAAAACUAAAGACGAAGAAGAAGAAACAGCAGCAGCAGCAGCUAAUUAAAGAAGAAGACUACAUGCUGACGCUGCAGGCAGAUAUGCCGCGAGUCACGGGAAGAAGACGAUAAAAGGGGAAGACAGUAGGAAGGCCUCCCGGGUUUGUCCACACGGCGACACACACCACGAGCUAGCGUACGUGCAGCUACGCAAUCGGUUACAGCAGCGGAGGACGGCGGGUUGGCCUGGCUCUGGCUUGGCUUGGUUGCAUUUGCAUAUACGAUCGACGACGCACAGUUGGGCGUGGGGACGAAGAGGAGGCCACAGCGACCGACCGACCGGACAAAUCUCUGCAGCUGAUGAUCCCCAUUAUCAAUCUGAUGUAAUGUACCGAACACAGGUUACCAACCAGGAACAUGCAUUGAGCUAGGGGUAUUUAGCUAGUUUCAAAAGAAACCGUAUUUGAAAGAAAGGAUAUGGUACACCAUUUGGGAGGCCAACUGGAUCCCCUCAAGCCACAAUCUCAAAGUCAAUACUUACACCGCCAGAAGUUAAUCGAAUUUUAGAGAUACCACUGGUAGAAUUCCAACACCAGUUUGUUCACUGUUAGAUAUGCAUAGGAAAUGCUACUUAAUGGAGAAGGCAACGCUGAUAUUUCUGGUGUUCGGGAUAGACUCUAGAAGAUGAAUCUGCCUGAAAAAAAGUUAAAAUCUUUGGUUGAAGAGCUUUACAUGGCAUGGUGUCUCCUGCUCCAGGAGUACUAGCAGGGAAUAAACACAUCAAUAAUCAGGGAGGUUGUCUUGUGUGCCAAACUGAUGGUGGAGAUUGUGGAUACCCCAUACCUACACGACAUGUAUAUCCGACUGGGUAUGGGGUGCCAUGUAUAGAUAGAAUAUCUUUAAAGGGACUCGGGUUAAAUUCCAAACUUGUAUGUCAAGGAAAUACCCGGGAUCCUAGUUGGUUACGAUUGUAUUUUGUAUGUAACUACCUAUUCCAUUAGAGAUAUGGACUGUACUUAGGAGGGGUCCGGGUGCCUCUUGGGGCACGAUUUUGCUCCUAGAUCAUACGAUCAAUAAUACACUCGGCGGAUCAAUCCCCGGACAGGAGUAGGGUAUUACUUCUUGUUAAGAAGGCCUGAACCUGUAUAAAA
Sequence
(OSA-LNCN7278.2):
GGUGAUAGAUGCACGAGGCAAAACUAAAGACGAAGAAGAAGAAACAGCAGCAGCAGCAGCUAAUUAAAGAAGAAGACUACAUGCUGACGCUGCAGGCAGAUAUGCCGCGAGUCACGGGAAGAAGACGAUAAAAGGGGAAGACAGUAGGAAGGCCUCCCGGGUUUGUCUACGUGUUUGCACAGCACACGGCGACACACACCACGAGCUAGCGUACGUGCAGCUACGCAAUCGGUUACAGCAGCGGAGGACGGCGGGUUGGCCUGGCUCUGGCUUGGCUUGGUUGCAUUUGCAUAUACGAUCGACGACGCACAGUUGGGCGUGGGGACGAAGAGGAGGCCACAGCGACCGACCGACCGGACAAAUCUCUGCAGCUGAUGAUCCCCAUUAUCAAUCUGAUGUAAUGUACCGAACACAGGUUACCAACCAGGAACAUGCAUUGAGCUAGGGGUAUUUAGCUAGUUUCAAAAGAAACCGUAUUUGAAAGAAAGGAUAUGGUACACCAUUUGGGAGGCCAACUGGAUCCCCUCAAGCCACAAUCUCAAAGUCAAUACUUACACCGCCAGAAGAUAUGCAUAGGAAAUGCUACUUAAUGGAGAAGGCAACGCUGAUAUUUCUGGUGUUCGGGAUAGACUCUAGAAGAUGAAUCUGCCUGAAAAAAAGUUAAAAUCUUUGGUUGAAGAGCUUUACAUGGCAUGGUGUCUCCUGCUCCAGGAGUACUAGCAGGGAAUAAACACAUCAAUAAUCAGGGAGGUUGUCUUGUGUGCCAAACUGAUGGUGGAGAUUGUGGAUACCCCAUACCUACACGACAUGUAUAUCCGACUGGGUAUGGGGUGCCAUGUAUAGAUAGAAUAUCUUUAAAGGGACUCGGGUUAAAUUCCAAACUUGUAUGUCAAGGAAAUACCCGGGAUCCUAGUUGGUUACGAUUGUAUUUUGUAUGUAACUACCUAUUCCAUUAGAGAUAUGGACUGUACUUAGGAGGGGUCCGGGUGCCUCUUGGGGCACGAUUUUGCUCCUAGAUCAUACGAUCAAUAAUACACUCGGCGGAUCAAUCCCCGGACAGGAGUAGGGUAUUACUUCUUGUUAAGAAGGCCUGAACCUGUAUAAAA
HE: High-Expressed (TPM > upper quantile); ME: Medium-Expressed (TPM < upper quantile and TPM > lower quantile); LE: Low-Expressed (TPM < lower quantile); NE: Not Expressed.
HEP: High-Expressed Percentage; MEP: Medium-Expressed Percentage; LEP: Low-Expressed Percentage; NEP: Not Expressed Percentage.
NE_num:
1
NEP:
0.2%
LE_num:
LEP:
95.93%
ME_num:
MEP:
3.66%
HE_num:
HEP:
0.2%
Type:
HCR (High-Capacity ncRNA)
cutoff: tau > 0.9 and Average expression in the tissue > 10
Tissue :
shoot
Tau :
1.00
Avg Expression:
1.51
cutoff: log2(fold change) > 1 or log2(fold change) < -1 and p-adj < 0.01
| Num. | Condition | log2(FoldChange) | Padj |
|---|---|---|---|
| 1 | Nipponbare // shoot // No_DIS;Fr13_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 2.93098736889596 | 0.00664883565696553 |
| 2 | Nipponbare // shoot // Drought_during_3_days;_mock_inoculated--/--Nipponbare // shoot // Drought_during_3_days;Fr13_inoculated | 3.06817577487496 | 0.038203094812335 |
| 3 | Nipponbare // shoot // "Control,22C for 10 min, then 30C for 1h50 min"--/--Nipponbare // shoot // "Heat,42C for 10 min, then 30C for 1h50 min" | 4.22383267945849 | 3.68795673821535e-05 |
| 4 | Nipponbare // shoot // "Control, 22C for 10 min, then 30C for 50 min"--/--Nipponbare // shoot // "Heat, 42C for 10 min, then 30C for 50 min" | 4.77653134278703 | 0.0226648436023139 |